Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC9.5□□□□□ -0.89
PDZRN3Q9UPQ7 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 ZSWIM5P3-201ENST00000511265 2743 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC004014.2-201ENST00000623718 5122 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC006042.3-201ENST00000454684 1469 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC008033.1-201ENST00000216407 1162 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL078621.1-201ENST00000272567 768 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 RNU6-819P-201ENST00000364116 107 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL139327.1-201ENST00000382988 348 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 RN7SKP273-201ENST00000411392 314 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC011233.1-201ENST00000422812 283 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 TRIM60P3Y-201ENST00000432201 673 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 NDUFA5P4-201ENST00000436704 385 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 CUBNP2-201ENST00000443534 1139 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL031736.1-201ENST00000449688 618 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC092570.2-201ENST00000452117 1143 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC097262.1-201ENST00000452559 548 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 ZNF114P1-201ENST00000453500 292 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 YRDCP3-201ENST00000456507 480 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 DAP3-209ENST00000465375 729 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 RPL12P40-201ENST00000467028 488 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 RN7SL791P-201ENST00000467868 295 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC139272.1-201ENST00000505516 640 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 ASNSP4-201ENST00000511103 447 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC068790.1-201ENST00000536166 355 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL442663.2-201ENST00000554385 511 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 HMGN1P26-201ENST00000558737 303 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC087468.1-201ENST00000604365 630 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 CR382285.1-202ENST00000604687 547 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC069545.1-201ENST00000605671 358 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL096855.2-201ENST00000605785 369 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC104260.1-201ENST00000616660 539 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 MFSD8-256ENST00000641949 1640 ntBASIC9.49□□□□□ -0.89
PDZRN3Q9UPQ7 ASIC5-201ENST00000537611 1692 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 WASF5P-205ENST00000428639 1455 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 AC090643.1-201ENST00000623600 3100 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 FUNDC2P3-201ENST00000334716 533 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 RNU4-39P-201ENST00000362455 127 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 MIR555-201ENST00000384987 96 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 LARP1P1-201ENST00000407692 292 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 VN1R35P-201ENST00000428102 693 ntBASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC9.48□□□□□ -0.89
PDZRN3Q9UPQ7 GAPDHP34-201ENST00000432112 823 ntBASIC9.48□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms