Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PTGS1-205ENST00000540753 5375 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 AL035555.1-201ENST00000404462 1790 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 CLCA3P-203ENST00000490028 2781 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 PTGS1-202ENST00000362012 4964 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
PRKDCP78527 HMGB3P24-201ENST00000433260 622 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC4.16□□□□□ -1.74
PRKDCP78527 AC103792.1-201ENST00000603591 919 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 CCDC88A-202ENST00000336838 9505 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.15□□□□□ -1.74
PRKDCP78527 MED28P3-201ENST00000444288 531 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 TRY2P-201ENST00000448860 689 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
PRKDCP78527 RPL7P16-201ENST00000479738 738 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 RN7SL205P-201ENST00000490174 284 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.15□□□□□ -1.74
PRKDCP78527 AC026688.1-201ENST00000520639 1168 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.74
PRKDCP78527 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 RN7SL52P-201ENST00000584271 284 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 AC093799.2-201ENST00000610062 578 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 RN7SL722P-201ENST00000617780 284 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 RN7SL565P-201ENST00000618246 284 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC4.15□□□□□ -1.74
PRKDCP78527 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.15□□□□□ -1.74
PRKDCP78527 SLC14A2-201ENST00000255226 4746 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 AL022323.3-201ENST00000623888 5388 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 UNC45B-202ENST00000394570 5638 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 RNU1-77P-201ENST00000390868 162 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 PRDM15-202ENST00000398548 6654 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 AL133388.1-201ENST00000404509 287 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.15□□□□□ -1.74
PRKDCP78527 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
PRKDCP78527 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.15□□□□□ -1.74
PRKDCP78527 AC002075.1-201ENST00000457396 676 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.15□□□□□ -1.74
PRKDCP78527 AC114728.1-201ENST00000488289 483 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
PRKDCP78527 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.15□□□□□ -1.74
PRKDCP78527 AC012616.1-201ENST00000600294 197 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 Z97832.2-201ENST00000605896 4261 ntBASIC4.15□□□□□ -1.74
PRKDCP78527 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC4.15□□□□□ -1.75
PRKDCP78527 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 DYNC1I2P1-201ENST00000435916 1838 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.15□□□□□ -1.75
PRKDCP78527 AC099677.3-201ENST00000427081 395 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.15□□□□□ -1.75
PRKDCP78527 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 AC134349.2-201ENST00000535136 910 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.15□□□□□ -1.75
PRKDCP78527 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.15□□□□□ -1.75
PRKDCP78527 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC4.15□□□□□ -1.75
PRKDCP78527 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 AC003992.1-201ENST00000635364 557 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 PCSK1-201ENST00000311106 5086 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 CHST6-201ENST00000332272 7957 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
PRKDCP78527 DNAJC27-AS1-205ENST00000434897 4660 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 AC012313.8-201ENST00000595059 5402 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
PRKDCP78527 PAX6-245ENST00000638914 7300 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PRKDCP78527 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 AL162456.1-201ENST00000634535 2006 ntBASIC4.15□□□□□ -1.75
PRKDCP78527 ARID1B-210ENST00000635849 5830 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC4.15□□□□□ -1.75
PRKDCP78527 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PRKDCP78527 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PRKDCP78527 CAV1-204ENST00000393470 598 ntTSL 4 BASIC4.14□□□□□ -1.75
PRKDCP78527 AL023284.3-201ENST00000407767 334 ntBASIC4.14□□□□□ -1.75
PRKDCP78527 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms