Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA3P55318 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL161756.3-201ENST00000641216 2071 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA3P55318 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL031595.2-201ENST00000624215 19071 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA3P55318 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
FOXA3P55318 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA3P55318 RN7SKP166-201ENST00000410812 305 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 RN7SKP279-201ENST00000411383 298 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 AC099670.2-201ENST00000435130 321 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA3P55318 CCNJP1-201ENST00000450600 1149 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 ST13P21-201ENST00000453250 1098 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 DEFB109A-201ENST00000482450 265 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA3P55318 Z99943.2-201ENST00000507585 266 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA3P55318 AC111000.6-201ENST00000514471 709 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 IGHV4-55-201ENST00000520889 368 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 OR4A43P-201ENST00000532938 908 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC023968.1-201ENST00000560719 475 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC4.55□□□□□ -1.68
FOXA3P55318 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA3P55318 ZNF473-209ENST00000601364 603 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA3P55318 AC024451.4-201ENST00000602578 752 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AL121782.1-201ENST00000611242 413 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC015712.7-201ENST00000615211 635 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 LINC02495-203ENST00000636704 242 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AC020633.1-201ENST00000468439 2247 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 RGS20-207ENST00000522225 1559 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA3P55318 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA3P55318 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA3P55318 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
FOXA3P55318 HSPD1P1-201ENST00000503199 1726 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 AL449283.1-201ENST00000602631 3403 ntBASIC4.55□□□□□ -1.68
FOXA3P55318 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 AL137058.3-201ENST00000624531 3099 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA3P55318 RNA5SP152-201ENST00000365184 110 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 TRMT13-203ENST00000370143 476 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA3P55318 U3.52-201ENST00000384034 216 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA3P55318 NACAP7-201ENST00000407371 609 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA3P55318 RANP6-201ENST00000413691 644 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA3P55318 AC000089.1-201ENST00000424559 801 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 AL136231.1-201ENST00000429407 730 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 RN7SL197P-201ENST00000466981 299 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AC022730.1-201ENST00000473114 568 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 RPS16P9-201ENST00000477220 427 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA3P55318 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC4.54□□□□□ -1.68
FOXA3P55318 GAPDHP38-201ENST00000503632 1002 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA3P55318 B3GNTL1P1-201ENST00000509174 289 ntBASIC4.54□□□□□ -1.68
FOXA3P55318 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms