Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BTF3L4P1-201ENST00000413813 468 ntBASIC7.52□□□□□ -1.21
LIG3P49916 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC7.52□□□□□ -1.21
LIG3P49916 RPL6P2-201ENST00000425480 783 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AC118469.1-201ENST00000442943 488 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AC092421.1-201ENST00000448148 418 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AL390026.1-201ENST00000456647 457 ntBASIC7.52□□□□□ -1.21
LIG3P49916 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC7.52□□□□□ -1.21
LIG3P49916 USP9YP25-201ENST00000457708 443 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 RN7SL325P-201ENST00000460434 283 ntBASIC7.52□□□□□ -1.21
LIG3P49916 RPL12P40-201ENST00000467028 488 ntBASIC7.52□□□□□ -1.21
LIG3P49916 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 RPS3AP43-201ENST00000479743 781 ntBASIC7.52□□□□□ -1.21
LIG3P49916 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 LAMTOR3P2-201ENST00000504479 232 ntBASIC7.52□□□□□ -1.21
LIG3P49916 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 RNA5SP116-201ENST00000516132 98 ntBASIC7.52□□□□□ -1.21
LIG3P49916 RNA5SP303-201ENST00000516192 130 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC7.52□□□□□ -1.21
LIG3P49916 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC7.52□□□□□ -1.21
LIG3P49916 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC7.52□□□□□ -1.21
LIG3P49916 AC090695.1-201ENST00000561269 1222 ntBASIC7.52□□□□□ -1.21
LIG3P49916 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC7.52□□□□□ -1.21
LIG3P49916 FRG2IP-201ENST00000563581 781 ntBASIC7.52□□□□□ -1.21
LIG3P49916 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC7.52□□□□□ -1.21
LIG3P49916 AC067838.1-201ENST00000606064 577 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AL583856.2-201ENST00000606298 543 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.52□□□□□ -1.21
LIG3P49916 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 AL138478.1-201ENST00000612252 832 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 BX005040.2-201ENST00000620504 370 ntBASIC7.52□□□□□ -1.21
LIG3P49916 METAP1-212ENST00000625963 147 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 DLST-216ENST00000626051 252 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 AC103706.2-201ENST00000638080 240 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AL596275.2-207ENST00000641188 675 ntBASIC7.52□□□□□ -1.21
LIG3P49916 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.52□□□□□ -1.21
LIG3P49916 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.52□□□□□ -1.21
LIG3P49916 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC7.52□□□□□ -1.21
LIG3P49916 DDX18P5-201ENST00000534547 1306 ntBASIC7.52□□□□□ -1.21
LIG3P49916 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
LIG3P49916 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
LIG3P49916 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 FGG-201ENST00000336098 1659 ntTSL 2 BASIC7.51□□□□□ -1.21
LIG3P49916 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.51□□□□□ -1.21
LIG3P49916 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 AC010132.2-201ENST00000295493 1043 ntBASIC7.51□□□□□ -1.21
LIG3P49916 RN7SKP63-201ENST00000363187 301 ntBASIC7.51□□□□□ -1.21
LIG3P49916 SSX6-201ENST00000376932 562 ntBASIC7.51□□□□□ -1.21
LIG3P49916 RN7SKP225-201ENST00000410405 352 ntBASIC7.51□□□□□ -1.21
LIG3P49916 RN7SKP131-201ENST00000410698 301 ntBASIC7.51□□□□□ -1.21
LIG3P49916 AC092638.1-201ENST00000411966 1275 ntBASIC7.51□□□□□ -1.21
LIG3P49916 RPL26P37-201ENST00000411983 438 ntBASIC7.51□□□□□ -1.21
LIG3P49916 MTND4P22-201ENST00000413116 1169 ntBASIC7.51□□□□□ -1.21
LIG3P49916 ELOCP9-201ENST00000418624 239 ntBASIC7.51□□□□□ -1.21
LIG3P49916 CLIC4P3-201ENST00000422221 752 ntBASIC7.51□□□□□ -1.21
LIG3P49916 GPN3P1-201ENST00000423883 535 ntBASIC7.51□□□□□ -1.21
LIG3P49916 PPIL1P1-201ENST00000423936 499 ntBASIC7.51□□□□□ -1.21
LIG3P49916 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
LIG3P49916 NQO1-204ENST00000439109 924 ntTSL 2 BASIC7.51□□□□□ -1.21
LIG3P49916 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC7.51□□□□□ -1.21
LIG3P49916 AC011742.2-201ENST00000443818 352 ntBASIC7.51□□□□□ -1.21
LIG3P49916 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC7.51□□□□□ -1.21
LIG3P49916 MTND2P4-201ENST00000445034 1004 ntBASIC7.51□□□□□ -1.21
LIG3P49916 ELOCP30-201ENST00000447108 299 ntBASIC7.51□□□□□ -1.21
LIG3P49916 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 AL929410.2-201ENST00000451170 189 ntBASIC7.51□□□□□ -1.21
LIG3P49916 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
LIG3P49916 RN7SL145P-201ENST00000469955 296 ntBASIC7.51□□□□□ -1.21
LIG3P49916 AC135999.1-201ENST00000478962 479 ntBASIC7.51□□□□□ -1.21
LIG3P49916 AK6-203ENST00000502819 743 ntTSL 5 BASIC7.51□□□□□ -1.21
LIG3P49916 RNU5A-4P-201ENST00000516588 111 ntBASIC7.51□□□□□ -1.21
LIG3P49916 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.51□□□□□ -1.21
LIG3P49916 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.51□□□□□ -1.21
LIG3P49916 HMGB1P1-201ENST00000522557 636 ntBASIC7.51□□□□□ -1.21
LIG3P49916 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC7.51□□□□□ -1.21
LIG3P49916 AC006518.2-201ENST00000542513 940 ntBASIC7.51□□□□□ -1.21
LIG3P49916 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC7.51□□□□□ -1.21
LIG3P49916 AC008015.1-201ENST00000555505 465 ntBASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms