Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF136-201ENST00000343979 3643 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 AL138847.1-201ENST00000258651 546 ntBASIC7.47□□□□□ -1.21
MSX1P28360 OR1G1-201ENST00000328890 998 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
MSX1P28360 RNA5SP301-201ENST00000362537 121 ntBASIC7.47□□□□□ -1.21
MSX1P28360 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 CYCSP45-201ENST00000402289 315 ntBASIC7.47□□□□□ -1.21
MSX1P28360 CCNYL3-201ENST00000407030 998 ntBASIC7.47□□□□□ -1.21
MSX1P28360 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 HMGB3P23-201ENST00000414981 585 ntBASIC7.47□□□□□ -1.21
MSX1P28360 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 LINC00265-202ENST00000448955 468 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 PCMTD1P3-201ENST00000451824 472 ntBASIC7.47□□□□□ -1.21
MSX1P28360 NIPA2P5-201ENST00000452282 464 ntBASIC7.47□□□□□ -1.21
MSX1P28360 AL591438.2-201ENST00000452635 691 ntBASIC7.47□□□□□ -1.21
MSX1P28360 RFC5P1-201ENST00000454419 874 ntBASIC7.47□□□□□ -1.21
MSX1P28360 OR6K1P-201ENST00000456766 971 ntBASIC7.47□□□□□ -1.21
MSX1P28360 AC107398.1-201ENST00000486904 505 ntBASIC7.47□□□□□ -1.21
MSX1P28360 RPL23AP82-208ENST00000496652 1112 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 KRT18P54-201ENST00000513396 748 ntBASIC7.47□□□□□ -1.21
MSX1P28360 AC107220.1-201ENST00000514347 1037 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC091982.1-201ENST00000518134 520 ntBASIC7.47□□□□□ -1.21
MSX1P28360 TPT1-AS1-214ENST00000521507 665 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC7.47□□□□□ -1.21
MSX1P28360 ZNF726-203ENST00000525354 806 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 AC087521.3-201ENST00000528226 553 ntTSL 4 BASIC7.47□□□□□ -1.21
MSX1P28360 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC7.47□□□□□ -1.21
MSX1P28360 AC027808.2-203ENST00000558261 638 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 AC009119.1-204ENST00000561599 564 ntTSL 4 BASIC7.47□□□□□ -1.21
MSX1P28360 PCMTD1P2-201ENST00000565017 355 ntBASIC7.47□□□□□ -1.21
MSX1P28360 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.47□□□□□ -1.21
MSX1P28360 AC090699.1-201ENST00000586264 321 ntBASIC7.47□□□□□ -1.21
MSX1P28360 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 MRPS5P4-201ENST00000592830 325 ntBASIC7.47□□□□□ -1.21
MSX1P28360 AC007785.1-201ENST00000597989 332 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 AC006238.1-201ENST00000609787 534 ntBASIC7.47□□□□□ -1.21
MSX1P28360 AL109806.1-201ENST00000623967 1248 ntBASIC7.47□□□□□ -1.21
MSX1P28360 LINC02034-201ENST00000635368 760 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 AC087885.1-201ENST00000641910 848 ntBASIC7.47□□□□□ -1.21
MSX1P28360 FMOD-201ENST00000354955 3310 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 HRH4-201ENST00000256906 3668 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 MITF-214ENST00000472437 1995 ntAPPRIS ALT1 TSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 IL1R1-208ENST00000424272 2658 ntTSL 5 BASIC7.47□□□□□ -1.21
MSX1P28360 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC7.47□□□□□ -1.21
MSX1P28360 AC024132.1-201ENST00000382007 2509 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 LINC01692-201ENST00000441009 2719 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 RRM2-201ENST00000304567 3271 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 AC009090.4-201ENST00000623921 3691 ntBASIC7.47□□□□□ -1.21
MSX1P28360 CEACAMP3-201ENST00000473762 1548 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 LRP4-AS1-201ENST00000502049 1504 ntTSL 2 BASIC7.47□□□□□ -1.21
MSX1P28360 CD40LG-201ENST00000370628 1720 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
MSX1P28360 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
MSX1P28360 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC7.46□□□□□ -1.21
MSX1P28360 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC7.46□□□□□ -1.21
MSX1P28360 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 AP001157.1-201ENST00000550837 2339 ntBASIC7.46□□□□□ -1.21
MSX1P28360 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC7.46□□□□□ -1.21
MSX1P28360 ADCY10P1-203ENST00000567255 4569 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
MSX1P28360 MGC27382-202ENST00000436742 1993 ntTSL 2 BASIC7.46□□□□□ -1.21
MSX1P28360 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 PBLD-202ENST00000309049 2165 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 AC135352.1-201ENST00000506173 1418 ntBASIC7.46□□□□□ -1.21
MSX1P28360 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC7.46□□□□□ -1.21
MSX1P28360 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC7.46□□□□□ -1.21
MSX1P28360 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
MSX1P28360 ZNF649-201ENST00000354957 3197 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
MSX1P28360 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC7.46□□□□□ -1.22
MSX1P28360 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
MSX1P28360 ESRP1-203ENST00000433389 3770 ntAPPRIS P4 TSL 1 (best) BASIC7.46□□□□□ -1.22
MSX1P28360 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
MSX1P28360 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
MSX1P28360 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
MSX1P28360 RNU5F-7P-201ENST00000363696 115 ntBASIC7.46□□□□□ -1.22
MSX1P28360 RNU6-374P-201ENST00000364146 108 ntBASIC7.46□□□□□ -1.22
MSX1P28360 FANK1-201ENST00000368689 522 ntTSL 3 BASIC7.46□□□□□ -1.22
MSX1P28360 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.22
MSX1P28360 Y_RNA.460-201ENST00000384255 102 ntBASIC7.46□□□□□ -1.22
MSX1P28360 OR2W4P-201ENST00000406496 926 ntBASIC7.46□□□□□ -1.22
MSX1P28360 RNA5SP265-201ENST00000411023 111 ntBASIC7.46□□□□□ -1.22
MSX1P28360 AC010385.1-201ENST00000412374 256 ntBASIC7.46□□□□□ -1.22
MSX1P28360 AC013429.2-201ENST00000418798 781 ntBASIC7.46□□□□□ -1.22
MSX1P28360 LINC00993-201ENST00000420453 540 ntBASIC7.46□□□□□ -1.22
MSX1P28360 AC007742.1-201ENST00000425789 329 ntBASIC7.46□□□□□ -1.22
MSX1P28360 AC005534.2-201ENST00000431047 433 ntBASIC7.46□□□□□ -1.22
MSX1P28360 ELOCP26-201ENST00000436067 329 ntBASIC7.46□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms