Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 AC114786.1-201ENST00000512892 1415 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 AL022237.1-201ENST00000446663 358 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC100832.1-201ENST00000471945 383 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AL355032.1-201ENST00000472981 438 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC009120.1-201ENST00000493458 473 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 RN7SKP288-201ENST00000516227 268 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.47□□□□□ -1.21
COL5A3P25940 OR8G3P-201ENST00000533406 921 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC7.47□□□□□ -1.21
COL5A3P25940 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.47□□□□□ -1.21
COL5A3P25940 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 TAS2R6P-201ENST00000605022 826 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AL139099.4-201ENST00000614802 114 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
COL5A3P25940 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 AC092725.2-201ENST00000567658 1389 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 CASC19-248ENST00000641674 1356 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL5A3P25940 SNORA70-201ENST00000384436 135 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 METTL15P3-201ENST00000415522 1221 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC7.47□□□□□ -1.21
COL5A3P25940 RPS26P41-201ENST00000450370 284 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC103563.5-201ENST00000455643 364 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 RN7SL329P-201ENST00000467740 299 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC231760.1-201ENST00000498002 260 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 HSPE1P2-201ENST00000554777 306 ntBASIC7.47□□□□□ -1.21
COL5A3P25940 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC7.47□□□□□ -1.21
COL5A3P25940 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.47□□□□□ -1.21
COL5A3P25940 MRE11P1-201ENST00000464884 2127 ntBASIC7.46□□□□□ -1.21
COL5A3P25940 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL5A3P25940 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL5A3P25940 TNPO1P2-201ENST00000426249 2665 ntBASIC7.46□□□□□ -1.21
COL5A3P25940 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL5A3P25940 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.46□□□□□ -1.22
COL5A3P25940 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.46□□□□□ -1.22
COL5A3P25940 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC7.46□□□□□ -1.22
COL5A3P25940 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
COL5A3P25940 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL5A3P25940 AL136531.3-201ENST00000624378 3658 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AC104447.1-201ENST00000624214 2124 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
COL5A3P25940 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.46□□□□□ -1.22
COL5A3P25940 RNA5SP30-201ENST00000365552 115 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 RN7SKP273-201ENST00000411392 314 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL5A3P25940 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.46□□□□□ -1.22
COL5A3P25940 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.46□□□□□ -1.22
COL5A3P25940 BZW1P1-201ENST00000454901 1240 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 NDUFA5P12-201ENST00000503796 343 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
COL5A3P25940 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.46□□□□□ -1.22
COL5A3P25940 GARSP1-201ENST00000570895 719 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.46□□□□□ -1.22
COL5A3P25940 AL445222.1-201ENST00000607259 628 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AL512329.2-201ENST00000607350 548 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 AC087516.1-201ENST00000561236 2428 ntBASIC7.46□□□□□ -1.22
COL5A3P25940 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL5A3P25940 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.46□□□□□ -1.22
COL5A3P25940 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
COL5A3P25940 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
COL5A3P25940 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 MIR1286-201ENST00000408112 78 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 AC015977.1-201ENST00000418887 292 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 AURKAPS1-201ENST00000451805 1212 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 RPL38P3-201ENST00000484463 213 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.45□□□□□ -1.22
COL5A3P25940 AC021146.10-201ENST00000515628 706 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.45□□□□□ -1.22
COL5A3P25940 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL5A3P25940 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.45□□□□□ -1.22
COL5A3P25940 AL359513.1-201ENST00000614364 557 ntBASIC7.45□□□□□ -1.22
COL5A3P25940 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms