Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPS7P5-201ENST00000441482 581 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AL021939.1-201ENST00000441868 886 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 TCEA1P3-201ENST00000443005 880 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AL020997.1-201ENST00000446554 349 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 MTCO3P11-201ENST00000455103 774 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC093899.1-201ENST00000457984 376 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 RN7SL587P-201ENST00000459853 281 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC079841.1-201ENST00000481228 950 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 RN7SL388P-201ENST00000498736 339 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC111198.1-201ENST00000505575 606 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 CDC42P4-201ENST00000510507 563 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 RNA5SP422-201ENST00000516778 111 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AP005902.2-201ENST00000518393 307 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 TSPAN8-203ENST00000546561 1168 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 OVCH1-AS1-201ENST00000549411 743 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AL132719.1-201ENST00000554515 423 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 LINC01588-213ENST00000557142 492 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC092868.1-201ENST00000557949 802 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 LAMTOR5-AS1-205ENST00000587691 441 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC003002.3-201ENST00000597410 521 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC243960.3-201ENST00000599316 580 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 LINC01515-209ENST00000599409 755 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC090181.2-201ENST00000602975 672 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC083899.3-201ENST00000603413 594 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AL136363.2-201ENST00000604173 851 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ATE1-AS1-202ENST00000636460 506 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 LINC01739-205ENST00000641890 573 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 CREM-216ENST00000429130 1476 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 TNS4-201ENST00000254051 4067 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 UPP2-201ENST00000005756 2224 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 FHL1-204ENST00000370683 2565 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC140Q96MF4 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.06□□□□□ -1.44
CCDC140Q96MF4 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 IST1-208ENST00000535424 4082 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 NUDT13-203ENST00000372997 1919 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 OR5E1P-201ENST00000305754 927 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RNU6-621P-201ENST00000364752 109 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 MGST3-202ENST00000367884 716 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 TRMT13-203ENST00000370143 476 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SNORA10-201ENST00000384084 133 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RNU6-1119P-201ENST00000384349 108 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 Y_RNA.516-201ENST00000384541 124 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RNY3P10-201ENST00000384764 102 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RNA5SP23-201ENST00000391006 105 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 PHBP1-201ENST00000392260 808 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RAN-201ENST00000392367 780 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SLC9B1P2-201ENST00000398120 1184 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 FCF1P9-201ENST00000412546 282 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL450992.3-201ENST00000413192 568 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 MTND4LP11-201ENST00000422184 280 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 CYCSP46-201ENST00000423569 204 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 RPL19P21-201ENST00000424919 591 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AL353052.1-201ENST00000428673 818 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AC007559.1-201ENST00000428736 355 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 SKP1P3-201ENST00000429280 487 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 KRT18P53-201ENST00000431919 117 ntBASIC6.05□□□□□ -1.44
CCDC140Q96MF4 AJ006995.1-201ENST00000433344 572 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC140Q96MF4 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms