Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC073389.3-201ENST00000609434 935 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 FUNDC2P3-201ENST00000334716 533 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NPM1P4-201ENST00000414095 812 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 EMC3-AS1-205ENST00000438698 534 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SOCS5P1-201ENST00000440415 949 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RN7SL382P-201ENST00000482631 282 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OR4A13P-201ENST00000529316 942 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 TDGP1-201ENST00000543961 1229 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OLR1-210ENST00000544577 924 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NCOA4P3-201ENST00000513203 1877 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OFD1P15Y-201ENST00000411536 1392 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC110373.1-201ENST00000505994 3505 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RNU1-49P-201ENST00000363468 159 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SMARCE1P6-201ENST00000398372 1216 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 Y_RNA.625-201ENST00000411256 107 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RPL35AP31-201ENST00000418340 337 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 VDAC1P2-201ENST00000423609 850 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 EEF1B2P2-201ENST00000519625 676 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC007225.2-201ENST00000562529 256 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC005514.1-201ENST00000623521 208 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC027575.3-201ENST00000583058 2747 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MTCO1P28-201ENST00000574177 1528 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RBMY2AP-201ENST00000445405 1157 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RBMY2CP-201ENST00000448575 1157 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RBMY2DP-202ENST00000448881 1157 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RBMY2BP-202ENST00000451071 1156 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RN7SL221P-201ENST00000466190 281 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 SYPL1P2-201ENST00000582878 727 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC005332.4-201ENST00000592752 579 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MIR6748-201ENST00000610433 71 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC093225.1-201ENST00000506867 1408 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 BTK-209ENST00000618050 2417 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC005034.3-201ENST00000604845 1747 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 DPPA2P3-201ENST00000411853 655 ntBASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC1.92□□□□□ -2.1
SYNE1Q8NF91 RN7SL366P-201ENST00000577957 292 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms