Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 EIF3EP1-201ENST00000433978 1316 ntBASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HDDC3Q8N4P3 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC083806.2-201ENST00000617795 2685 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 SNORA17A-201ENST00000391185 133 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 IGLV3-4-201ENST00000432300 244 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC094019.1-201ENST00000434678 472 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 PNKDP1-201ENST00000435914 430 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 FABP5P2-201ENST00000439042 408 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 IGLV3-6-201ENST00000523937 250 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 NANOGNBP2-201ENST00000544753 553 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 NPM1P45-201ENST00000583151 559 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC090616.1-201ENST00000583895 447 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AL953862.2-201ENST00000603089 820 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC092681.3-201ENST00000609463 678 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC241377.1-201ENST00000619797 406 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 SNORA17.5-201ENST00000630429 132 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 OR7E91P-202ENST00000642062 1198 ntBASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.43□□□□□ -1.38
HDDC3Q8N4P3 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 MAPK10-344ENST00000641718 3746 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC062022.1-201ENST00000451026 1684 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 MIR323A-201ENST00000362199 86 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 Z68694.1-201ENST00000413929 841 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 NXT1P1-201ENST00000458481 316 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 RN7SL643P-201ENST00000471845 291 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 RPL12P30-201ENST00000488389 499 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 RN7SL104P-201ENST00000498686 293 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC096754.1-201ENST00000508904 818 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC253576.1-201ENST00000511645 1156 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 OR4A13P-201ENST00000529316 942 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC015818.6-201ENST00000584274 634 ntBASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.42□□□□□ -1.38
HDDC3Q8N4P3 AC027243.2-201ENST00000602530 724 ntBASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms