Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC092725.2-201ENST00000567658 1389 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.83□□□□□ -1.16
COL18A1P39060 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.83□□□□□ -1.16
COL18A1P39060 BX284632.1-201ENST00000478218 541 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 SUMO2P7-201ENST00000511179 285 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 OR8G3P-201ENST00000533406 921 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.83□□□□□ -1.16
COL18A1P39060 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL18A1P39060 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.83□□□□□ -1.16
COL18A1P39060 AC008937.3-201ENST00000606813 1700 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
COL18A1P39060 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.83□□□□□ -1.16
COL18A1P39060 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
COL18A1P39060 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
COL18A1P39060 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
COL18A1P39060 MIR1286-201ENST00000408112 78 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.82□□□□□ -1.16
COL18A1P39060 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 RN7SL165P-201ENST00000477476 291 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 AC244502.2-201ENST00000543361 851 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 HSPE1P2-201ENST00000554777 306 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.82□□□□□ -1.16
COL18A1P39060 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 AC092944.2-201ENST00000605443 889 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 AC005840.5-201ENST00000619166 599 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 AC114786.1-201ENST00000512892 1415 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 AL136531.3-201ENST00000624378 3658 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.82□□□□□ -1.16
COL18A1P39060 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 SNORA70-201ENST00000384436 135 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 AC103563.5-201ENST00000455643 364 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 RN7SL329P-201ENST00000467740 299 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 RPS23P1-201ENST00000491662 432 ntBASIC7.82□□□□□ -1.16
COL18A1P39060 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.82□□□□□ -1.16
COL18A1P39060 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC7.82□□□□□ -1.16
COL18A1P39060 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.82□□□□□ -1.16
COL18A1P39060 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
COL18A1P39060 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 CASC19-248ENST00000641674 1356 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
COL18A1P39060 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 AL159987.1-201ENST00000347911 293 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 AC015983.1-201ENST00000441577 373 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 AC004815.1-201ENST00000484185 331 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.81□□□□□ -1.16
COL18A1P39060 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC7.81□□□□□ -1.16
COL18A1P39060 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
COL18A1P39060 AL139407.1-201ENST00000613826 1175 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 AL161756.3-201ENST00000641216 2071 ntBASIC7.81□□□□□ -1.16
COL18A1P39060 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
COL18A1P39060 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC7.81□□□□□ -1.16
COL18A1P39060 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms