Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPS27P20-201ENST00000492051 246 ntBASIC6.87□□□□□ -1.31
BDNFP23560 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC6.87□□□□□ -1.31
BDNFP23560 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.87□□□□□ -1.31
BDNFP23560 SUMO2P7-201ENST00000511179 285 ntBASIC6.87□□□□□ -1.31
BDNFP23560 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.87□□□□□ -1.31
BDNFP23560 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BDNFP23560 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.87□□□□□ -1.31
BDNFP23560 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.87□□□□□ -1.31
BDNFP23560 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.87□□□□□ -1.31
BDNFP23560 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.87□□□□□ -1.31
BDNFP23560 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 AL953862.2-201ENST00000603089 820 ntBASIC6.87□□□□□ -1.31
BDNFP23560 AL359704.2-201ENST00000604335 521 ntBASIC6.87□□□□□ -1.31
BDNFP23560 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 AC025171.4-201ENST00000607250 1047 ntBASIC6.87□□□□□ -1.31
BDNFP23560 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.87□□□□□ -1.31
BDNFP23560 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 LINC02495-203ENST00000636704 242 ntBASIC6.87□□□□□ -1.31
BDNFP23560 AC010325.3-201ENST00000641084 394 ntBASIC6.87□□□□□ -1.31
BDNFP23560 AL596275.2-208ENST00000641192 594 ntBASIC6.87□□□□□ -1.31
BDNFP23560 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
BDNFP23560 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
BDNFP23560 WBP11P1-201ENST00000562560 1931 ntBASIC6.87□□□□□ -1.31
BDNFP23560 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BDNFP23560 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
BDNFP23560 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
BDNFP23560 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
BDNFP23560 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 RPL31P11-201ENST00000426558 1558 ntBASIC6.86□□□□□ -1.31
BDNFP23560 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 AP003486.1-201ENST00000525716 3994 ntBASIC6.86□□□□□ -1.31
BDNFP23560 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 TMCC1P1-201ENST00000518897 1980 ntBASIC6.86□□□□□ -1.31
BDNFP23560 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 AC003973.3-201ENST00000624863 2822 ntBASIC6.86□□□□□ -1.31
BDNFP23560 OR2M1P-201ENST00000318104 951 ntBASIC6.86□□□□□ -1.31
BDNFP23560 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 RPL24P2-201ENST00000421023 475 ntBASIC6.86□□□□□ -1.31
BDNFP23560 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.86□□□□□ -1.31
BDNFP23560 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.86□□□□□ -1.31
BDNFP23560 TIMM8BP2-201ENST00000445940 251 ntBASIC6.86□□□□□ -1.31
BDNFP23560 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.86□□□□□ -1.31
BDNFP23560 H3F3AP5-201ENST00000475267 429 ntBASIC6.86□□□□□ -1.31
BDNFP23560 GM2AP2-201ENST00000491764 562 ntBASIC6.86□□□□□ -1.31
BDNFP23560 AC022206.1-201ENST00000495947 347 ntBASIC6.86□□□□□ -1.31
BDNFP23560 RNA5SP418-201ENST00000515951 117 ntBASIC6.86□□□□□ -1.31
BDNFP23560 SNORA74.1-201ENST00000516320 180 ntBASIC6.86□□□□□ -1.31
BDNFP23560 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.86□□□□□ -1.31
BDNFP23560 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 AC023968.1-201ENST00000560719 475 ntBASIC6.86□□□□□ -1.31
BDNFP23560 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.86□□□□□ -1.31
BDNFP23560 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.86□□□□□ -1.31
BDNFP23560 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
BDNFP23560 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BDNFP23560 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.86□□□□□ -1.31
BDNFP23560 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.86□□□□□ -1.31
BDNFP23560 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
BDNFP23560 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
BDNFP23560 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.85□□□□□ -1.31
BDNFP23560 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.85□□□□□ -1.31
BDNFP23560 RPL11P4-201ENST00000332269 436 ntBASIC6.85□□□□□ -1.31
BDNFP23560 RNA5SP232-201ENST00000364144 119 ntBASIC6.85□□□□□ -1.31
BDNFP23560 RNU1-24P-201ENST00000364285 165 ntBASIC6.85□□□□□ -1.31
BDNFP23560 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 RN7SKP281-201ENST00000410472 352 ntBASIC6.85□□□□□ -1.31
BDNFP23560 RNU2-18P-201ENST00000411224 162 ntBASIC6.85□□□□□ -1.31
BDNFP23560 AL713922.1-201ENST00000416477 747 ntBASIC6.85□□□□□ -1.31
BDNFP23560 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.85□□□□□ -1.31
BDNFP23560 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.85□□□□□ -1.31
BDNFP23560 RPL23AP85-201ENST00000421838 433 ntBASIC6.85□□□□□ -1.31
BDNFP23560 VN1R20P-201ENST00000425215 966 ntBASIC6.85□□□□□ -1.31
BDNFP23560 MED28P4-201ENST00000433137 572 ntBASIC6.85□□□□□ -1.31
BDNFP23560 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BDNFP23560 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.85□□□□□ -1.31
BDNFP23560 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.85□□□□□ -1.31
BDNFP23560 CYCSP51-201ENST00000443545 318 ntBASIC6.85□□□□□ -1.31
BDNFP23560 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms