Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSH3P20585 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 AC068769.1-201ENST00000474767 2426 ntBASIC6.26□□□□□ -1.41
MSH3P20585 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH3P20585 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSH3P20585 RN7SKP237-201ENST00000364663 301 ntBASIC6.26□□□□□ -1.41
MSH3P20585 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 RNA5SP115-201ENST00000411160 107 ntBASIC6.26□□□□□ -1.41
MSH3P20585 RPL23AP18-201ENST00000416139 468 ntBASIC6.26□□□□□ -1.41
MSH3P20585 THEM7P-201ENST00000419556 672 ntBASIC6.26□□□□□ -1.41
MSH3P20585 LDHAP2-201ENST00000437325 985 ntBASIC6.26□□□□□ -1.41
MSH3P20585 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 AC009237.1-201ENST00000442127 744 ntBASIC6.26□□□□□ -1.41
MSH3P20585 RBMY2AP-201ENST00000445405 1157 ntBASIC6.26□□□□□ -1.41
MSH3P20585 RBMY2CP-201ENST00000448575 1157 ntBASIC6.26□□□□□ -1.41
MSH3P20585 RBMY2DP-202ENST00000448881 1157 ntBASIC6.26□□□□□ -1.41
MSH3P20585 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH3P20585 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSH3P20585 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 AL121579.2-201ENST00000555466 590 ntBASIC6.26□□□□□ -1.41
MSH3P20585 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH3P20585 MTATP6P25-201ENST00000574491 261 ntBASIC6.26□□□□□ -1.41
MSH3P20585 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH3P20585 AC005828.7-201ENST00000607331 556 ntBASIC6.26□□□□□ -1.41
MSH3P20585 AC002044.3-201ENST00000623314 541 ntBASIC6.26□□□□□ -1.41
MSH3P20585 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.26□□□□□ -1.41
MSH3P20585 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH3P20585 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSH3P20585 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 AC011815.2-201ENST00000618230 2021 ntBASIC6.25□□□□□ -1.41
MSH3P20585 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
MSH3P20585 LCN1P2-201ENST00000372030 223 ntBASIC6.25□□□□□ -1.41
MSH3P20585 RNU6-316P-201ENST00000391027 107 ntBASIC6.25□□□□□ -1.41
MSH3P20585 HMGA1P8-201ENST00000414130 321 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AC010086.1-201ENST00000437359 1052 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH3P20585 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.25□□□□□ -1.41
MSH3P20585 RN7SL552P-201ENST00000462094 276 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 RN7SL568P-201ENST00000493069 298 ntBASIC6.25□□□□□ -1.41
MSH3P20585 HMGN1P16-201ENST00000508308 283 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.25□□□□□ -1.41
MSH3P20585 AC022784.5-201ENST00000522241 437 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AP001804.1-201ENST00000526868 919 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.25□□□□□ -1.41
MSH3P20585 OR4A41P-201ENST00000533053 928 ntBASIC6.25□□□□□ -1.41
MSH3P20585 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6.25□□□□□ -1.41
MSH3P20585 AC121758.1-202ENST00000556917 658 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AC005632.2-201ENST00000564271 828 ntBASIC6.25□□□□□ -1.41
MSH3P20585 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AL352984.2-201ENST00000611153 546 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AL445649.1-201ENST00000615941 691 ntBASIC6.25□□□□□ -1.41
MSH3P20585 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH3P20585 AC010809.3-201ENST00000621310 641 ntBASIC6.25□□□□□ -1.41
MSH3P20585 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH3P20585 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
MSH3P20585 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH3P20585 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH3P20585 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH3P20585 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
MSH3P20585 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.24□□□□□ -1.41
MSH3P20585 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms