Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AL445647.2-201ENST00000615170 130 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 NEK2P4-201ENST00000425793 1329 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AL512310.3-201ENST00000547023 1335 ntBASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 DMD-222ENST00000474231 5209 ntTSL 5 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
CCDC39Q9UFE4 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AP003486.1-201ENST00000525716 3994 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 OR5H2-201ENST00000355273 945 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC121334.1-201ENST00000396414 802 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 RN7SKP39-201ENST00000410773 322 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 VDAC1P10-201ENST00000416715 891 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 SEPT2P1-201ENST00000419651 180 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC010099.3-201ENST00000423896 409 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 BX119904.3-201ENST00000428194 957 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 NDUFA5P1-201ENST00000433858 341 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 DBIL5P2-201ENST00000443827 253 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 RPLP0P1-201ENST00000457002 361 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC091982.1-202ENST00000473923 343 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 ANK3-213ENST00000486349 493 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MTCO2P9-201ENST00000503214 694 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AL391156.1-201ENST00000554965 554 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC090888.1-201ENST00000561335 1141 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC024614.1-201ENST00000577546 307 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MTATP6P3-201ENST00000581686 676 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC087575.1-201ENST00000585087 229 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MIR4719-201ENST00000585233 84 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC010503.3-201ENST00000594355 540 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC011497.2-201ENST00000600255 639 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AL109653.1-201ENST00000603091 248 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC093765.1-201ENST00000603758 881 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AL139344.1-201ENST00000605228 195 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AL583856.2-201ENST00000606298 543 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC078880.5-201ENST00000617845 421 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 FKBP1AP4-201ENST00000631775 336 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 AC125232.1-201ENST00000452554 1408 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 TNPO1P2-201ENST00000426249 2665 ntBASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CCDC39Q9UFE4 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC004014.2-201ENST00000623718 5122 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LCOR-201ENST00000286067 4542 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL157698.1-201ENST00000415190 1011 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 TIMM9P2-201ENST00000419324 266 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 CLIC4P3-201ENST00000422221 752 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 NEK4P1-201ENST00000433383 879 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 ATP5LP4-201ENST00000434169 307 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 CR391992.1-201ENST00000438601 394 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL512326.1-201ENST00000443050 721 ntBASIC7.91□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms