Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC28BQ9BUN5 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC027279.4-201ENST00000624371 2072 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC026523.2-201ENST00000625039 7739 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RN7SKP69-201ENST00000365390 305 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RNA5SP187-201ENST00000384400 119 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RPL12P10-201ENST00000413498 498 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RPL18AP14-201ENST00000417685 526 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 HMGN2P27-201ENST00000427352 270 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AL136231.1-201ENST00000429407 730 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 USP24P1-201ENST00000433802 779 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 NPM1P18-201ENST00000434232 732 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC073410.1-201ENST00000435125 589 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 MORF4-201ENST00000447135 971 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RANP2-201ENST00000456833 229 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RPL5P15-201ENST00000475870 897 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 NPM1P21-201ENST00000513394 762 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC092718.4-201ENST00000566639 716 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RN7SL426P-201ENST00000579106 295 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 MIR132-201ENST00000591554 101 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC024085.1-201ENST00000604299 432 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC073046.2-201ENST00000604756 527 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC114477.1-201ENST00000605097 605 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 TP53TG1_2.1-201ENST00000611226 182 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 MIR6762-201ENST00000613340 86 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC097641.3-201ENST00000613523 464 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 AL136984.1-201ENST00000607611 1893 ntBASIC6.05□□□□□ -1.44
CCDC28BQ9BUN5 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 RGS5-202ENST00000367903 934 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 RNU2-5P-201ENST00000410533 180 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AC016908.1-201ENST00000442571 1219 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 RPL6P24-201ENST00000445338 864 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AL020997.1-201ENST00000446554 349 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 RAB28P2-201ENST00000454299 641 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AC073594.1-201ENST00000462065 364 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 MORF4L2P1-201ENST00000503761 858 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AC137549.1-201ENST00000514243 533 ntBASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC28BQ9BUN5 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms