Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC027575.3-201ENST00000583058 2747 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 FAM32BP-201ENST00000344033 333 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LCN1P2-201ENST00000372030 223 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AL023284.3-201ENST00000407767 334 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RPS29P14-201ENST00000431518 171 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 IGLV3-4-201ENST00000432300 244 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RN7SL643P-201ENST00000471845 291 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RN7SL369P-201ENST00000477138 299 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RPL12P31-201ENST00000478433 450 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 OR7E99P-201ENST00000505750 922 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 MTCO3P42-201ENST00000509488 518 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 MTCO3P39-201ENST00000514812 518 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 RN7SL753P-201ENST00000581238 290 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AC139493.1-201ENST00000604368 397 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AC073389.3-201ENST00000609434 935 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AP002345.2-201ENST00000609961 904 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AL080312.2-201ENST00000613001 630 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 AL096712.1-201ENST00000614561 159 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
CCDC3Q9BQI4 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC013488.1-201ENST00000526618 1838 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 HSPD1P9-201ENST00000420325 1636 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC097463.1-201ENST00000447288 481 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC096754.1-201ENST00000508904 818 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 KHDC1P1-201ENST00000511053 508 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 IGHV4-55-201ENST00000520889 368 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC027369.2-201ENST00000528030 440 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 SETP3-201ENST00000581726 813 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AP005136.2-201ENST00000583253 1049 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC008507.3-201ENST00000585753 472 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AC108865.2-201ENST00000606881 432 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MIR6862-1-201ENST00000613016 70 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MIR6862-2-201ENST00000614755 70 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 FAM27E2-201ENST00000619668 403 ntBASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC3Q9BQI4 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms