Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RPL12P30-201ENST00000488389 499 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AL117692.1-201ENST00000494283 713 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 SNX18P24-201ENST00000505249 671 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC112484.3-201ENST00000505910 329 ntBASIC5.88□□□□□ -1.47
LIM2P55344 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.88□□□□□ -1.47
LIM2P55344 HMGN1P17-201ENST00000513734 295 ntBASIC5.88□□□□□ -1.47
LIM2P55344 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 RNA5SP441-201ENST00000516809 88 ntBASIC5.88□□□□□ -1.47
LIM2P55344 Y_RNA.710-201ENST00000516975 110 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.88□□□□□ -1.47
LIM2P55344 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 AC092865.1-201ENST00000544395 1023 ntBASIC5.88□□□□□ -1.47
LIM2P55344 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 AC004232.2-201ENST00000574245 821 ntBASIC5.88□□□□□ -1.47
LIM2P55344 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC022106.1-201ENST00000612834 766 ntBASIC5.88□□□□□ -1.47
LIM2P55344 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AL162377.2-201ENST00000624532 337 ntBASIC5.88□□□□□ -1.47
LIM2P55344 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
LIM2P55344 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 HDAC1P2-201ENST00000453661 1398 ntBASIC5.88□□□□□ -1.47
LIM2P55344 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 AC090181.3-201ENST00000624777 1514 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC005725.1-201ENST00000577346 2607 ntBASIC5.88□□□□□ -1.47
LIM2P55344 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 AC096921.2-201ENST00000561507 1916 ntBASIC5.87□□□□□ -1.47
LIM2P55344 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIM2P55344 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LIM2P55344 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIM2P55344 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIM2P55344 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIM2P55344 ZNF658B-201ENST00000602828 3408 ntBASIC5.87□□□□□ -1.47
LIM2P55344 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LIM2P55344 YWHAZP6-201ENST00000399764 738 ntBASIC5.87□□□□□ -1.47
LIM2P55344 RN7SKP144-201ENST00000411108 279 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AL035422.1-201ENST00000414193 397 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AC007562.1-201ENST00000421819 517 ntBASIC5.87□□□□□ -1.47
LIM2P55344 RPL7AP14-201ENST00000424041 802 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AC092865.3-201ENST00000425390 1026 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.87□□□□□ -1.47
LIM2P55344 GAPDHP59-201ENST00000435908 267 ntBASIC5.87□□□□□ -1.47
LIM2P55344 CLNS1AP1-201ENST00000435954 682 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 GAPDHP23-201ENST00000444823 993 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AC023274.2-201ENST00000445264 521 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AL590004.3-202ENST00000445883 451 ntBASIC5.87□□□□□ -1.47
LIM2P55344 TIMM8BP2-201ENST00000445940 251 ntBASIC5.87□□□□□ -1.47
LIM2P55344 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC5.87□□□□□ -1.47
LIM2P55344 AC007494.1-201ENST00000562293 760 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 OR1E3-201ENST00000575608 948 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 SMIM12P1-201ENST00000603004 274 ntBASIC5.87□□□□□ -1.47
LIM2P55344 AP001823.1-201ENST00000604056 1003 ntBASIC5.87□□□□□ -1.47
LIM2P55344 uc_338.31-201ENST00000615595 186 ntBASIC5.87□□□□□ -1.47
LIM2P55344 MIR6721-201ENST00000617181 87 ntBASIC5.87□□□□□ -1.47
LIM2P55344 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.87□□□□□ -1.47
LIM2P55344 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.87□□□□□ -1.47
LIM2P55344 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.87□□□□□ -1.47
LIM2P55344 OR7A1P-202ENST00000641542 1158 ntBASIC5.87□□□□□ -1.47
LIM2P55344 EIF3EP1-201ENST00000433978 1316 ntBASIC5.87□□□□□ -1.47
LIM2P55344 PPBPP2-201ENST00000513150 1362 ntBASIC5.87□□□□□ -1.47
LIM2P55344 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC5.87□□□□□ -1.47
LIM2P55344 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIM2P55344 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms