Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL352984.2-202ENST00000613699 155 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 MAPK10-261ENST00000641050 3109 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
FOXA1P55317 AC016583.1-201ENST00000624221 2431 ntBASIC5.9□□□□□ -1.47
FOXA1P55317 ABCA11P-202ENST00000504019 2110 ntBASIC5.9□□□□□ -1.47
FOXA1P55317 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
FOXA1P55317 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
FOXA1P55317 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.9□□□□□ -1.47
FOXA1P55317 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
FOXA1P55317 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.9□□□□□ -1.47
FOXA1P55317 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.9□□□□□ -1.47
FOXA1P55317 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
FOXA1P55317 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.9□□□□□ -1.47
FOXA1P55317 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
FOXA1P55317 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 AC092646.2-201ENST00000431242 2095 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXA1P55317 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
FOXA1P55317 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXA1P55317 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXA1P55317 RPL23AP60-201ENST00000450011 454 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 snoU13.29-201ENST00000459370 104 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXA1P55317 RN7SL502P-201ENST00000481857 290 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 AC124945.1-201ENST00000485133 188 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXA1P55317 TOMM22P4-201ENST00000511318 336 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.89□□□□□ -1.47
FOXA1P55317 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXA1P55317 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 AL136097.3-201ENST00000611097 505 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 AL138960.1-201ENST00000613838 513 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 AC089999.3-201ENST00000622440 577 ntBASIC5.89□□□□□ -1.47
FOXA1P55317 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.89□□□□□ -1.47
FOXA1P55317 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.89□□□□□ -1.47
FOXA1P55317 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
FOXA1P55317 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.89□□□□□ -1.47
FOXA1P55317 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
FOXA1P55317 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
FOXA1P55317 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
FOXA1P55317 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.88□□□□□ -1.47
FOXA1P55317 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 SNORA64.3-201ENST00000365647 134 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC013403.1-201ENST00000436954 263 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.88□□□□□ -1.47
FOXA1P55317 RNA5SP434-201ENST00000516647 121 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC5.88□□□□□ -1.47
FOXA1P55317 AL049840.6-202ENST00000603373 279 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 AL122023.1-201ENST00000622847 530 ntBASIC5.88□□□□□ -1.47
FOXA1P55317 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.88□□□□□ -1.47
FOXA1P55317 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
FOXA1P55317 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
FOXA1P55317 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms