Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.86□□□□□ -1.15
COL18A1P39060 OTX2P1-201ENST00000450956 354 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 RANP1-206ENST00000455094 651 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AC112187.1-201ENST00000455837 479 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 RPL35AP19-201ENST00000469425 329 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AC073610.1-201ENST00000489971 396 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AC083795.1-201ENST00000491760 320 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.86□□□□□ -1.15
COL18A1P39060 HMGB1P42-201ENST00000532126 553 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 IGBP1P1-201ENST00000554337 1009 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AC013731.1-201ENST00000604340 883 ntBASIC7.86□□□□□ -1.15
COL18A1P39060 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL18A1P39060 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
COL18A1P39060 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.85□□□□□ -1.15
COL18A1P39060 AL157831.2-201ENST00000564681 3095 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL18A1P39060 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
COL18A1P39060 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL18A1P39060 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
COL18A1P39060 MIR640-201ENST00000385086 96 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.85□□□□□ -1.15
COL18A1P39060 TNPO1P1-201ENST00000423641 1138 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.85□□□□□ -1.15
COL18A1P39060 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.85□□□□□ -1.15
COL18A1P39060 RN7SL184P-201ENST00000488308 297 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 AC009120.1-201ENST00000493458 473 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC7.85□□□□□ -1.15
COL18A1P39060 AC044860.2-201ENST00000561005 179 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL18A1P39060 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.85□□□□□ -1.15
COL18A1P39060 AC118658.2-201ENST00000618697 459 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 AC007683.2-201ENST00000624681 714 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC7.85□□□□□ -1.15
COL18A1P39060 SRRM1P3-201ENST00000426911 2678 ntBASIC7.85□□□□□ -1.15
COL18A1P39060 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.85□□□□□ -1.15
COL18A1P39060 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC7.85□□□□□ -1.15
COL18A1P39060 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL18A1P39060 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL18A1P39060 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.85□□□□□ -1.15
COL18A1P39060 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 AL022237.1-201ENST00000446663 358 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 AC093763.2-201ENST00000505334 1223 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 HAUS8P1-201ENST00000549005 542 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 AL390726.5-202ENST00000564800 256 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 MIR8080-201ENST00000622224 89 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 AC073429.2-201ENST00000569694 1444 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 MRE11P1-201ENST00000464884 2127 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 AC105749.1-201ENST00000631338 2008 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 RNA5SP514-201ENST00000363717 111 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 RN7SKP273-201ENST00000411392 314 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 AL139148.1-201ENST00000427122 680 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 RPS26P41-201ENST00000450370 284 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 AC109481.1-201ENST00000509173 282 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 NRBF2P4-201ENST00000520874 850 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC7.84□□□□□ -1.15
COL18A1P39060 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 AL445222.1-201ENST00000607259 628 ntBASIC7.84□□□□□ -1.15
COL18A1P39060 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.84□□□□□ -1.15
COL18A1P39060 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL18A1P39060 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.84□□□□□ -1.15
COL18A1P39060 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.84□□□□□ -1.16
COL18A1P39060 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.16
COL18A1P39060 PARP4P1-201ENST00000435945 2337 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 NCOA4P3-201ENST00000513203 1877 ntBASIC7.83□□□□□ -1.16
COL18A1P39060 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL18A1P39060 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL18A1P39060 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms