Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.52□□□□□ -1.2
COL5A3P25940 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC7.52□□□□□ -1.2
COL5A3P25940 OR4A40P-201ENST00000533878 948 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.52□□□□□ -1.2
COL5A3P25940 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
COL5A3P25940 AC013731.1-201ENST00000604340 883 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 AC136428.4-201ENST00000634254 1155 ntBASIC7.52□□□□□ -1.2
COL5A3P25940 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.52□□□□□ -1.21
COL5A3P25940 YES1P1-201ENST00000418510 1628 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 AC007342.5-201ENST00000571340 2142 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL5A3P25940 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
COL5A3P25940 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.52□□□□□ -1.21
COL5A3P25940 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.52□□□□□ -1.21
COL5A3P25940 MIR640-201ENST00000385086 96 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 MRPL53P1-201ENST00000414323 319 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 AC112187.1-201ENST00000455837 479 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC7.52□□□□□ -1.21
COL5A3P25940 KCTD9P4-201ENST00000526766 1166 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC145423.1-201ENST00000605712 336 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL5A3P25940 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL5A3P25940 AC007842.1-201ENST00000597336 2039 ntBASIC7.52□□□□□ -1.21
COL5A3P25940 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC7.51□□□□□ -1.21
COL5A3P25940 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.51□□□□□ -1.21
COL5A3P25940 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 TNPO1P1-201ENST00000423641 1138 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 CNOT7P2-201ENST00000441051 832 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC073610.1-201ENST00000489971 396 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC083795.1-201ENST00000491760 320 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 AC244502.2-201ENST00000543361 851 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.51□□□□□ -1.21
COL5A3P25940 PPATP2-201ENST00000605635 508 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC024255.1-201ENST00000614376 102 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 MIR7155-201ENST00000615925 56 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 MIR6730-201ENST00000622213 67 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC021766.1-201ENST00000624404 741 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 NCOA4P3-201ENST00000513203 1877 ntBASIC7.51□□□□□ -1.21
COL5A3P25940 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.51□□□□□ -1.21
COL5A3P25940 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.51□□□□□ -1.21
COL5A3P25940 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL5A3P25940 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
COL5A3P25940 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL5A3P25940 MALAT1-202ENST00000534336 8708 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
COL5A3P25940 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.5□□□□□ -1.21
COL5A3P25940 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.5□□□□□ -1.21
COL5A3P25940 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.5□□□□□ -1.21
COL5A3P25940 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 AC005532.2-201ENST00000467154 373 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 RN7SL165P-201ENST00000477476 291 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 AC024558.1-201ENST00000505008 528 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 HMGB1P42-201ENST00000532126 553 ntBASIC7.5□□□□□ -1.21
COL5A3P25940 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC7.5□□□□□ -1.21
COL5A3P25940 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.5□□□□□ -1.21
COL5A3P25940 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.5□□□□□ -1.21
COL5A3P25940 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC7.5□□□□□ -1.21
COL5A3P25940 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 549.2 ms