Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC4P09017 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 RN7SKP15-201ENST00000364742 309 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 MIR433-201ENST00000384837 93 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 RNU11-6P-201ENST00000391127 133 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXC4P09017 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 RPL12P11-201ENST00000439970 501 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 SEPT14P12-201ENST00000442280 560 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 AC016908.1-201ENST00000442571 1219 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 GAPDHP23-201ENST00000444823 993 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC092967.1-201ENST00000449016 481 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 CFL1P4-201ENST00000451536 498 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 AC018717.1-201ENST00000457712 1505 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC4P09017 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC4P09017 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.12□□□□□ -1.43
HOXC4P09017 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 Y_RNA.710-201ENST00000516975 110 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXC4P09017 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC005726.4-201ENST00000582858 458 ntBASIC6.12□□□□□ -1.43
HOXC4P09017 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXC4P09017 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXC4P09017 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC4P09017 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXC4P09017 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
HOXC4P09017 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 AL354854.1-201ENST00000455940 1363 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
HOXC4P09017 EIF3EP1-201ENST00000433978 1316 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 RNU1-134P-201ENST00000362935 165 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 SNORA43.1-201ENST00000364863 140 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC4P09017 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 RNA5SP156-201ENST00000410250 110 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 RPL35AP31-201ENST00000418340 337 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 AC079807.1-201ENST00000429993 481 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 AC023141.3-201ENST00000436698 278 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AL353662.1-201ENST00000439099 327 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC144530.1-201ENST00000452862 555 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 LDHAP1-201ENST00000509421 992 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 OR6M2P-201ENST00000529831 871 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 LINC00556-201ENST00000569603 412 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXC4P09017 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXC4P09017 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 NPIPB1P-202ENST00000588786 828 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC068768.2-201ENST00000602352 343 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AL365181.4-201ENST00000609800 547 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 MIR6861-201ENST00000618657 64 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 AL512652.1-201ENST00000619006 500 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 AC022400.9-201ENST00000623633 273 ntBASIC6.11□□□□□ -1.43
HOXC4P09017 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXC4P09017 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXC4P09017 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXC4P09017 AC092692.1-201ENST00000623625 2595 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms