Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC062022.1-201ENST00000451026 1684 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 AC027279.4-201ENST00000624371 2072 ntBASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SHROOM4Q9ULL8 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AC005332.9-201ENST00000620266 2921 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AC020978.8-201ENST00000571975 3022 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 RN7SKP160-201ENST00000363804 340 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AL390726.5-202ENST00000564800 256 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AC104695.2-201ENST00000605056 775 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 PSG10P-201ENST00000501199 1500 ntBASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC11.87□□□□□ -0.51
SHROOM4Q9ULL8 AC073429.2-201ENST00000569694 1444 ntBASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 FO393409.1-201ENST00000399325 1372 ntBASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 MAPK10-371ENST00000641952 5209 ntBASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 SNORA58-201ENST00000505219 137 ntBASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 NDUFB5P1-201ENST00000508134 564 ntBASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SHROOM4Q9ULL8 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 AP003175.1-201ENST00000641383 6658 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 OR7E101P-201ENST00000400428 513 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 RNU6-233P-201ENST00000410845 141 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 RN7SKP216-201ENST00000411050 312 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 GEMIN2P1-201ENST00000454246 752 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 OLR1-210ENST00000544577 924 ntTSL 5 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 LAPTM4BP2-201ENST00000604542 446 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 AC010998.3-201ENST00000613871 631 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 AC241584.2-201ENST00000637142 2090 ntBASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SHROOM4Q9ULL8 RMST-210ENST00000640149 2844 ntTSL 5 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 RNA5SP500-201ENST00000364486 119 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AL713922.1-201ENST00000416477 747 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 PTMAP6-201ENST00000439110 327 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 RN7SL705P-201ENST00000481678 294 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC090958.1-201ENST00000511122 351 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC112191.2-201ENST00000522428 333 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 CASC19-222ENST00000641321 1173 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 CUBNP3-201ENST00000457461 1784 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC097634.1-201ENST00000604491 2467 ntBASIC11.84□□□□□ -0.51
SHROOM4Q9ULL8 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AL139415.1-201ENST00000424862 352 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AP001858.2-201ENST00000536213 601 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AP003119.3-201ENST00000566747 4192 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 AC010624.4-201ENST00000597606 1351 ntBASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC11.83□□□□□ -0.52
SHROOM4Q9ULL8 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms