Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC005632.2-201ENST00000564271 828 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC004232.1-201ENST00000571388 208 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPSAP75-201ENST00000605848 301 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL512652.1-201ENST00000619006 500 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC034229.6-201ENST00000623704 224 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC003989.1-201ENST00000434569 565 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPL5P14-201ENST00000494197 878 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL133399.1-201ENST00000527476 298 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RAD17P2-201ENST00000451754 1977 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 OR2A1-AS1-202ENST00000467944 422 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RN7SL717P-201ENST00000478343 297 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CR383658.1-201ENST00000514609 734 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 TSHZ2-205ENST00000626626 670 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RNA5SP500-201ENST00000364486 119 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPL23AP19-201ENST00000436229 369 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RN7SL860P-201ENST00000473738 223 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC073333.2-201ENST00000603589 769 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 SNORA74.4-201ENST00000607595 199 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC018628.1-201ENST00000624147 3819 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 OR4C1P-202ENST00000641065 1569 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 DMD-202ENST00000343523 5623 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AP005139.1-201ENST00000580702 1647 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 SNORA64.1-201ENST00000362600 132 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC011352.2-201ENST00000514574 1016 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC013244.1-201ENST00000604279 193 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MIR8089-201ENST00000620165 82 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC073429.2-201ENST00000569694 1444 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 HSPD1P4-201ENST00000547203 1702 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC022325.1-201ENST00000502748 2199 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms