Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 H3F3BP1-201ENST00000440551 403 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AC016908.1-201ENST00000442571 1219 ntBASIC5.9□□□□□ -1.46
LIM2P55344 RPS27AP3-201ENST00000453803 454 ntBASIC5.9□□□□□ -1.46
LIM2P55344 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.9□□□□□ -1.46
LIM2P55344 AC113367.2-201ENST00000505749 160 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AC095052.1-201ENST00000509955 863 ntBASIC5.9□□□□□ -1.46
LIM2P55344 SNX18P25-201ENST00000510539 758 ntBASIC5.9□□□□□ -1.46
LIM2P55344 RNA5SP116-201ENST00000516132 98 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.9□□□□□ -1.46
LIM2P55344 AP001858.2-201ENST00000536213 601 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.9□□□□□ -1.46
LIM2P55344 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 AL021368.3-201ENST00000607119 578 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AL591167.1-201ENST00000607321 456 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 AL135999.3-201ENST00000610501 812 ntBASIC5.9□□□□□ -1.46
LIM2P55344 MIR6889-201ENST00000613185 59 ntBASIC5.9□□□□□ -1.46
LIM2P55344 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.9□□□□□ -1.46
LIM2P55344 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
LIM2P55344 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.9□□□□□ -1.47
LIM2P55344 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC5.9□□□□□ -1.47
LIM2P55344 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 AOX3P-204ENST00000491025 2107 ntBASIC5.9□□□□□ -1.47
LIM2P55344 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
LIM2P55344 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.9□□□□□ -1.47
LIM2P55344 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
LIM2P55344 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 AC007114.2-201ENST00000576014 4281 ntBASIC5.9□□□□□ -1.47
LIM2P55344 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
LIM2P55344 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIM2P55344 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
LIM2P55344 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
LIM2P55344 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 AC092692.1-201ENST00000623625 2595 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 TRGV5P-201ENST00000419915 354 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AL139158.1-201ENST00000424719 340 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC5.89□□□□□ -1.47
LIM2P55344 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.89□□□□□ -1.47
LIM2P55344 HIGD1AP16-201ENST00000450986 258 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AL022319.1-201ENST00000458183 1167 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AC005165.2-201ENST00000466070 380 ntBASIC5.89□□□□□ -1.47
LIM2P55344 OR7E22P-201ENST00000478335 1035 ntBASIC5.89□□□□□ -1.47
LIM2P55344 RN7SL362P-201ENST00000494228 267 ntBASIC5.89□□□□□ -1.47
LIM2P55344 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.89□□□□□ -1.47
LIM2P55344 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 RN7SKP248-201ENST00000516278 305 ntBASIC5.89□□□□□ -1.47
LIM2P55344 NATP-201ENST00000523491 878 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AP001804.1-201ENST00000526868 919 ntBASIC5.89□□□□□ -1.47
LIM2P55344 NPIPB14P-203ENST00000532298 987 ntBASIC5.89□□□□□ -1.47
LIM2P55344 AC036111.2-201ENST00000533247 901 ntBASIC5.89□□□□□ -1.47
LIM2P55344 RPA2P3-201ENST00000533268 770 ntBASIC5.89□□□□□ -1.47
LIM2P55344 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 AL078601.3-201ENST00000573303 535 ntBASIC5.89□□□□□ -1.47
LIM2P55344 NPIPB1P-202ENST00000588786 828 ntBASIC5.89□□□□□ -1.47
LIM2P55344 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.89□□□□□ -1.47
LIM2P55344 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
LIM2P55344 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 SHQ1P1-201ENST00000437111 1544 ntBASIC5.89□□□□□ -1.47
LIM2P55344 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
LIM2P55344 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIM2P55344 IMMTP1-201ENST00000435590 2219 ntBASIC5.89□□□□□ -1.47
LIM2P55344 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 USP9YP3-201ENST00000434481 1766 ntBASIC5.88□□□□□ -1.47
LIM2P55344 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
LIM2P55344 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 RN7SKP171-201ENST00000364417 303 ntBASIC5.88□□□□□ -1.47
LIM2P55344 SNORA43.1-201ENST00000364863 140 ntBASIC5.88□□□□□ -1.47
LIM2P55344 SNORA70.9-201ENST00000384370 135 ntBASIC5.88□□□□□ -1.47
LIM2P55344 RN7SKP86-201ENST00000410454 332 ntBASIC5.88□□□□□ -1.47
LIM2P55344 HMGA1P8-201ENST00000414130 321 ntBASIC5.88□□□□□ -1.47
LIM2P55344 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.88□□□□□ -1.47
LIM2P55344 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIM2P55344 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.88□□□□□ -1.47
LIM2P55344 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.88□□□□□ -1.47
LIM2P55344 SLC25A51P1-201ENST00000468432 871 ntBASIC5.88□□□□□ -1.47
LIM2P55344 RPL34P33-201ENST00000486062 334 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms