Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.92□□□□□ -1.3
COPB1P53618 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.92□□□□□ -1.3
COPB1P53618 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COPB1P53618 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.92□□□□□ -1.3
COPB1P53618 AC116667.2-201ENST00000641075 823 ntBASIC6.92□□□□□ -1.3
COPB1P53618 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COPB1P53618 HDAC1P2-201ENST00000453661 1398 ntBASIC6.92□□□□□ -1.3
COPB1P53618 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.92□□□□□ -1.3
COPB1P53618 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.92□□□□□ -1.3
COPB1P53618 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.92□□□□□ -1.3
COPB1P53618 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.92□□□□□ -1.3
COPB1P53618 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 AP001541.1-201ENST00000623322 1904 ntBASIC6.91□□□□□ -1.3
COPB1P53618 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
COPB1P53618 RNA5SP308-201ENST00000362532 115 ntBASIC6.91□□□□□ -1.3
COPB1P53618 RNU1-59P-201ENST00000364829 162 ntBASIC6.91□□□□□ -1.3
COPB1P53618 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC6.91□□□□□ -1.3
COPB1P53618 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 RPS21P8-201ENST00000413365 247 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 VN1R53P-201ENST00000429536 957 ntBASIC6.91□□□□□ -1.3
COPB1P53618 PSMD8P1-201ENST00000436275 769 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AL500527.1-201ENST00000448532 255 ntBASIC6.91□□□□□ -1.3
COPB1P53618 FCF1P7-201ENST00000451185 558 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.91□□□□□ -1.3
COPB1P53618 AL355032.1-201ENST00000472981 438 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC6.91□□□□□ -1.3
COPB1P53618 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 RNA5SP400-201ENST00000517155 111 ntBASIC6.91□□□□□ -1.3
COPB1P53618 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 AC019227.1-201ENST00000526902 510 ntBASIC6.91□□□□□ -1.3
COPB1P53618 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 AC068408.1-201ENST00000577406 1144 ntBASIC6.91□□□□□ -1.3
COPB1P53618 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.91□□□□□ -1.3
COPB1P53618 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 NPIPB1P-202ENST00000588786 828 ntBASIC6.91□□□□□ -1.3
COPB1P53618 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 AL391001.1-201ENST00000602747 715 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 AC006924.1-201ENST00000610750 559 ntBASIC6.91□□□□□ -1.3
COPB1P53618 U1.25-201ENST00000614085 162 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 AC003001.2-201ENST00000616294 831 ntBASIC6.91□□□□□ -1.3
COPB1P53618 U1.34-201ENST00000618578 162 ntBASIC6.91□□□□□ -1.3
COPB1P53618 U1.31-201ENST00000620022 160 ntBASIC6.91□□□□□ -1.3
COPB1P53618 AC003992.1-201ENST00000635364 557 ntBASIC6.91□□□□□ -1.3
COPB1P53618 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.91□□□□□ -1.3
COPB1P53618 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
COPB1P53618 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COPB1P53618 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COPB1P53618 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.3
COPB1P53618 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 AC009220.2-201ENST00000489759 1751 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.9□□□□□ -1.3
COPB1P53618 AKAP17BP-201ENST00000431706 2719 ntBASIC6.9□□□□□ -1.3
COPB1P53618 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COPB1P53618 AL445238.1-204ENST00000400311 463 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AC244033.1-201ENST00000426826 870 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.9□□□□□ -1.3
COPB1P53618 EIF2S2P3-201ENST00000428356 999 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.9□□□□□ -1.3
COPB1P53618 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 RN7SL649P-201ENST00000496974 275 ntBASIC6.9□□□□□ -1.3
COPB1P53618 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.9□□□□□ -1.3
COPB1P53618 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.9□□□□□ -1.3
COPB1P53618 AC018645.1-201ENST00000505003 109 ntBASIC6.9□□□□□ -1.3
COPB1P53618 RN7SKP67-201ENST00000515905 235 ntBASIC6.9□□□□□ -1.3
COPB1P53618 RNU6-467P-201ENST00000517027 110 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.9□□□□□ -1.3
COPB1P53618 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 AC009729.1-201ENST00000548873 1133 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.9□□□□□ -1.3
COPB1P53618 AC122134.1-202ENST00000569111 1201 ntBASIC6.9□□□□□ -1.3
COPB1P53618 AC090079.2-201ENST00000575289 768 ntBASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms