Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 GNL2P1-201ENST00000451274 2190 ntBASIC6.54□□□□□ -1.36
COL4A4P53420 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL4A4P53420 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC6.54□□□□□ -1.36
COL4A4P53420 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL4A4P53420 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL4A4P53420 AC241584.2-201ENST00000637142 2090 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 AC027088.4-201ENST00000611559 1947 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 CR383656.5-201ENST00000547616 1340 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
COL4A4P53420 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 C4BPAP1-201ENST00000415474 1893 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC6.53□□□□□ -1.36
COL4A4P53420 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 SPTLC1P2-201ENST00000407089 121 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 Y_RNA.625-201ENST00000411256 107 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 RPL35AP3-201ENST00000414680 288 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 BMS1P17-202ENST00000416720 316 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.53□□□□□ -1.36
COL4A4P53420 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.53□□□□□ -1.36
COL4A4P53420 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 AC092593.2-201ENST00000513866 913 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.53□□□□□ -1.36
COL4A4P53420 CYCSP22-201ENST00000517555 339 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC6.53□□□□□ -1.36
COL4A4P53420 AC007342.5-201ENST00000571340 2142 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.53□□□□□ -1.36
COL4A4P53420 AC068870.2-201ENST00000620635 389 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 AL137067.2-201ENST00000621202 131 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 AL132640.3-201ENST00000630473 177 ntBASIC6.53□□□□□ -1.36
COL4A4P53420 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL4A4P53420 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.53□□□□□ -1.36
COL4A4P53420 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL4A4P53420 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.53□□□□□ -1.36
COL4A4P53420 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC6.52□□□□□ -1.36
COL4A4P53420 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL4A4P53420 AC073429.2-201ENST00000569694 1444 ntBASIC6.52□□□□□ -1.36
COL4A4P53420 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
COL4A4P53420 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COL4A4P53420 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.52□□□□□ -1.37
COL4A4P53420 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 RNU4-34P-201ENST00000410431 124 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 RPL35AP31-201ENST00000418340 337 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 KIF4CP-201ENST00000422742 1279 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 AC093166.4-201ENST00000457867 318 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 RN7SL466P-201ENST00000497546 295 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.52□□□□□ -1.37
COL4A4P53420 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.52□□□□□ -1.37
COL4A4P53420 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.52□□□□□ -1.37
COL4A4P53420 AL645933.2-201ENST00000606743 1207 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 RN7SL544P-201ENST00000617232 284 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 RN7SL763P-201ENST00000620922 284 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC6.52□□□□□ -1.37
COL4A4P53420 CCNT2P1-201ENST00000423082 1315 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AC235565.1-201ENST00000456962 1325 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AL080317.3-201ENST00000607434 4315 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL4A4P53420 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 RNA5SP375-201ENST00000362975 119 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 RN7SKP124-201ENST00000364730 341 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 UBE2V1P14-201ENST00000415815 558 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AC015977.1-201ENST00000418887 292 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AK4P4-201ENST00000419465 646 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.52□□□□□ -1.37
COL4A4P53420 FMO7P-201ENST00000436045 768 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AL022237.1-201ENST00000446663 358 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.52□□□□□ -1.37
COL4A4P53420 RPS23P1-201ENST00000491662 432 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AC138866.2-201ENST00000508650 584 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.52□□□□□ -1.37
COL4A4P53420 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 AC092865.1-201ENST00000544395 1023 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 206.6 ms