Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 U8.4-201ENST00000363626 134 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 RN7SKP279-201ENST00000411383 298 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 CCNB1IP1P1-201ENST00000428976 839 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 RPS3AP15-201ENST00000483874 781 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 SUGT1P3-202ENST00000604259 383 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 AC012557.1-201ENST00000607115 611 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC10.04□□□□□ -0.8
IFT140Q96RY7 AP001784.1-201ENST00000624107 428 ntBASIC10.04□□□□□ -0.8
IFT140Q96RY7 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 CYP4Z2P-201ENST00000423332 1512 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC024587.1-201ENST00000505925 2157 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC005042.1-201ENST00000393397 800 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC091390.2-201ENST00000432573 374 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 RANP1-206ENST00000455094 651 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 EIF1P7-201ENST00000487533 337 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC004825.1-201ENST00000555068 586 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC023818.2-201ENST00000623817 2304 ntBASIC10.03□□□□□ -0.8
IFT140Q96RY7 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC10.03□□□□□ -0.8
IFT140Q96RY7 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
IFT140Q96RY7 AC008555.1-201ENST00000561778 2757 ntBASIC10.02□□□□□ -0.8
IFT140Q96RY7 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
IFT140Q96RY7 AC110373.1-201ENST00000505994 3505 ntBASIC10.02□□□□□ -0.8
IFT140Q96RY7 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC10.02□□□□□ -0.8
IFT140Q96RY7 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
IFT140Q96RY7 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 MFSD4BP1-201ENST00000513330 1552 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 OR2M1P-201ENST00000318104 951 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 MIR223-201ENST00000385204 110 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 RN7SKP213-201ENST00000410746 298 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 AL807761.1-201ENST00000417622 171 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 HMGB3P24-201ENST00000433260 622 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 IGLV3-30-201ENST00000524362 298 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 AL121612.2-201ENST00000612261 482 ntBASIC10.02□□□□□ -0.81
IFT140Q96RY7 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
IFT140Q96RY7 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC10.02□□□□□ -0.81
IFT140Q96RY7 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC10.01□□□□□ -0.81
IFT140Q96RY7 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC10.01□□□□□ -0.81
IFT140Q96RY7 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 AC011447.6-201ENST00000623510 2598 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 AC105342.1-201ENST00000378334 6848 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
IFT140Q96RY7 SNORA11-201ENST00000408789 128 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 HMGA1P8-201ENST00000414130 321 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 HMGB1P32-201ENST00000425971 565 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 VN1R54P-201ENST00000435210 1049 ntBASIC10.01□□□□□ -0.81
IFT140Q96RY7 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms