Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 LINC01132-201ENST00000437601 3793 ntTSL 4 BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 NCLP2-201ENST00000416078 1462 ntBASIC9.21□□□□□ -0.94
RC3H1Q5TC82 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC9.21□□□□□ -0.94
RC3H1Q5TC82 MAPK10-281ENST00000641170 3070 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 MKL2-205ENST00000572567 2185 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 LRRC37A12P-201ENST00000454917 1801 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RNA5SP152-201ENST00000365184 110 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 CHMP1B2P-201ENST00000399581 597 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 BX119917.1-201ENST00000432517 502 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 USP9YP35-201ENST00000435696 412 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 TRIM60P8Y-201ENST00000436338 762 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL138899.2-201ENST00000439139 499 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 SUMO2P10-201ENST00000452006 288 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RPS6P2-201ENST00000454208 705 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RPSAP7-201ENST00000456871 885 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 UBDP1-202ENST00000457888 382 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RN7SL153P-201ENST00000486501 292 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR9N1P-201ENST00000491296 333 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR4V1P-201ENST00000525394 1140 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AP003033.2-201ENST00000528901 805 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC104383.1-201ENST00000530297 370 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC002400.1-201ENST00000569310 726 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC090616.5-202ENST00000582111 297 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC011500.1-201ENST00000601963 469 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AP001836.1-201ENST00000604675 523 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL161729.2-201ENST00000605700 456 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC024060.1-201ENST00000607052 494 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC011374.2-201ENST00000607135 526 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AP000255.1-201ENST00000610276 676 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 CLUHP10-201ENST00000631979 980 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 FSD1L-202ENST00000374710 7664 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC092999.1-201ENST00000624004 1924 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 ZNF610-207ENST00000601151 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 OR6M2P-202ENST00000641780 2063 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 MTND5P12-201ENST00000502851 1449 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 AC095038.1-201ENST00000429248 1591 ntBASIC9.2□□□□□ -0.94
RC3H1Q5TC82 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC9.2□□□□□ -0.94
RC3H1Q5TC82 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 EIF4BP4-201ENST00000441847 1780 ntBASIC9.19□□□□□ -0.94
RC3H1Q5TC82 IL16-201ENST00000302987 3999 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
RC3H1Q5TC82 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms