Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXA1P49639 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 U3.14-201ENST00000365363 227 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 OR6K3-202ENST00000368146 996 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 AL157698.1-201ENST00000415190 1011 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA1P49639 PAICSP2-201ENST00000429118 1150 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 AL356390.1-201ENST00000455684 397 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 RPSAP48-201ENST00000466509 889 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC008620.1-201ENST00000468453 592 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AL928654.1-201ENST00000476081 354 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 AC105345.2-201ENST00000515186 664 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.41□□□□□ -1.54
HOXA1P49639 SCARNA18.2-201ENST00000516882 84 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 OR8K2P-201ENST00000524645 927 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 REG4-204ENST00000530654 612 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA1P49639 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 MIR4262-201ENST00000578394 54 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 RN7SL311P-201ENST00000579858 306 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC011447.2-201ENST00000592921 283 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC010503.3-201ENST00000594355 540 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC010998.3-201ENST00000613871 631 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC253576.2-201ENST00000618815 580 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC012653.2-201ENST00000621880 420 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AC087894.3-201ENST00000623682 349 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 AC102941.1-201ENST00000567616 1537 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 MTCO1P25-201ENST00000414449 1799 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 AC019072.1-201ENST00000604535 1551 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA1P49639 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.41□□□□□ -1.54
HOXA1P49639 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
HOXA1P49639 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 AL049869.1-201ENST00000556933 1402 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
HOXA1P49639 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.4□□□□□ -1.54
HOXA1P49639 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXA1P49639 RNU6-386P-201ENST00000362650 107 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 RNA5SP188-201ENST00000362916 129 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 SNORA30B-201ENST00000365319 129 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC5.4□□□□□ -1.54
HOXA1P49639 TRAV35-201ENST00000390462 330 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
HOXA1P49639 OR1F12-201ENST00000402365 945 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AL049697.3-201ENST00000406493 982 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 RNU6-564P-201ENST00000410983 104 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC007064.3-201ENST00000422608 359 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 GAPDHP57-201ENST00000424400 585 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 CYP4F34P-201ENST00000425951 481 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 AL590399.2-201ENST00000427536 309 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 ZFAND6P1-201ENST00000434138 605 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 C5orf24-203ENST00000435259 851 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.54
HOXA1P49639 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXA1P49639 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXA1P49639 GOT2P2-201ENST00000450663 1251 ntBASIC5.4□□□□□ -1.54
HOXA1P49639 OR6C72P-201ENST00000451403 892 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms