Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 OR2W4P-201ENST00000406496 926 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 RPS26P41-201ENST00000450370 284 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 CBX1P2-201ENST00000453841 458 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 NPM1P27-201ENST00000502784 830 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 RNA5SP228-201ENST00000516232 133 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 SNORD91A-202ENST00000609620 191 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 SPATA31B1P-201ENST00000434692 4016 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC7.37□□□□□ -1.23
BRCA1P38398 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
BRCA1P38398 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
BRCA1P38398 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
BRCA1P38398 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 RPS15AP30-201ENST00000420976 390 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.37□□□□□ -1.23
BRCA1P38398 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 EEF1B2P5-201ENST00000444820 548 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC104164.1-201ENST00000460282 590 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 RPS17P15-201ENST00000475609 349 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 RPS21P4-201ENST00000487122 248 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 RN7SL57P-201ENST00000493687 290 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC010343.2-201ENST00000510162 224 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 CDC42P3-201ENST00000518493 633 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.37□□□□□ -1.23
BRCA1P38398 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.37□□□□□ -1.23
BRCA1P38398 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 AC141002.1-201ENST00000607025 279 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 AC007683.2-201ENST00000624681 714 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AL592429.1-201ENST00000403909 1473 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.37□□□□□ -1.23
BRCA1P38398 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
BRCA1P38398 CASC19-205ENST00000641013 1411 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
BRCA1P38398 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 AL359922.2-201ENST00000581788 3017 ntBASIC7.37□□□□□ -1.23
BRCA1P38398 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC7.37□□□□□ -1.23
BRCA1P38398 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
BRCA1P38398 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.37□□□□□ -1.23
BRCA1P38398 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.37□□□□□ -1.23
BRCA1P38398 AC022893.2-201ENST00000564832 3296 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
BRCA1P38398 U8.4-201ENST00000363626 134 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 AL445928.1-201ENST00000435545 222 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.36□□□□□ -1.23
BRCA1P38398 FRG2FP-204ENST00000453982 852 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RANP1-206ENST00000455094 651 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 AL672167.3-201ENST00000465951 960 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RPL35AP19-201ENST00000469425 329 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RPL7AP6-201ENST00000477943 801 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RPSAP50-201ENST00000481955 852 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RN7SL184P-201ENST00000488308 297 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 SNORA58-201ENST00000505219 137 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 IGLV3-30-201ENST00000524362 298 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 AL049539.1-201ENST00000611964 459 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 AL132640.3-201ENST00000630473 177 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
BRCA1P38398 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 YES1P1-201ENST00000418510 1628 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
BRCA1P38398 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
BRCA1P38398 AC016583.1-201ENST00000624221 2431 ntBASIC7.36□□□□□ -1.23
BRCA1P38398 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms