Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SMARCA1P28370 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC073916.1-201ENST00000545095 130 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 AC009729.1-201ENST00000548873 1133 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 RN7SL230P-201ENST00000580835 303 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AL589863.1-201ENST00000595383 631 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 AC004808.2-201ENST00000627965 773 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 DRG1-207ENST00000629688 309 ntTSL 5 BASIC7.4□□□□□ -1.22
SMARCA1P28370 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 AC022819.1-201ENST00000563495 3910 ntBASIC7.4□□□□□ -1.22
SMARCA1P28370 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.4□□□□□ -1.22
SMARCA1P28370 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.23
SMARCA1P28370 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SMARCA1P28370 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
SMARCA1P28370 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
SMARCA1P28370 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
SMARCA1P28370 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.23
SMARCA1P28370 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
SMARCA1P28370 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SMARCA1P28370 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.4□□□□□ -1.23
SMARCA1P28370 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 CASC19-246ENST00000641625 1606 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
SMARCA1P28370 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC7.39□□□□□ -1.23
SMARCA1P28370 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC7.39□□□□□ -1.23
SMARCA1P28370 AC097359.1-201ENST00000447946 463 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC7.39□□□□□ -1.23
SMARCA1P28370 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC7.39□□□□□ -1.23
SMARCA1P28370 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC7.39□□□□□ -1.23
SMARCA1P28370 AC135626.1-201ENST00000556983 435 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 AC005332.4-201ENST00000592752 579 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 AC087468.1-201ENST00000604365 630 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 MIR6889-201ENST00000613185 59 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC7.39□□□□□ -1.23
SMARCA1P28370 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SMARCA1P28370 AC139426.3-201ENST00000605648 2059 ntBASIC7.39□□□□□ -1.23
SMARCA1P28370 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.39□□□□□ -1.23
SMARCA1P28370 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AKAP17BP-201ENST00000431706 2719 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.38□□□□□ -1.23
SMARCA1P28370 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 OFD1P15Y-201ENST00000411536 1392 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SMARCA1P28370 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC7.38□□□□□ -1.23
SMARCA1P28370 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 RNU6-891P-201ENST00000384280 111 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 U3.43-201ENST00000410734 213 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 RNU2-72P-201ENST00000411175 163 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AC114878.1-201ENST00000441166 358 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 H3F3AP5-201ENST00000475267 429 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 RPL29P23-201ENST00000486188 442 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AC112184.1-201ENST00000505179 312 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AC010343.2-201ENST00000510162 224 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 IGHV7-34-1-201ENST00000519200 350 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 IGHV1-14-201ENST00000523391 241 ntBASIC7.38□□□□□ -1.23
SMARCA1P28370 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC7.38□□□□□ -1.23
SMARCA1P28370 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
SMARCA1P28370 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC7.38□□□□□ -1.23
SMARCA1P28370 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC7.38□□□□□ -1.23
SMARCA1P28370 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms