Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 RNA5SP485-201ENST00000365053 119 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-1263P-201ENST00000384601 106 ntBASIC6.92□□□□□ -1.3
BDNFP23560 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-1320P-201ENST00000390838 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-1269P-201ENST00000391139 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 HMGB1P32-201ENST00000425971 565 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RPSAP32-201ENST00000432681 526 ntBASIC6.92□□□□□ -1.3
BDNFP23560 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 AC097359.1-201ENST00000447946 463 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RAB28P3-201ENST00000448325 597 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-599P-201ENST00000459383 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-1193P-201ENST00000459461 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RN7SL39P-201ENST00000462264 297 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RN7SL741P-201ENST00000482473 289 ntBASIC6.92□□□□□ -1.3
BDNFP23560 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 RN7SL568P-201ENST00000493069 298 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AC018645.1-201ENST00000505003 109 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC6.92□□□□□ -1.3
BDNFP23560 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.92□□□□□ -1.3
BDNFP23560 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.92□□□□□ -1.3
BDNFP23560 RPL3P13-201ENST00000550415 216 ntBASIC6.92□□□□□ -1.3
BDNFP23560 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.92□□□□□ -1.3
BDNFP23560 BUB1P1-201ENST00000603541 607 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AC138473.1-201ENST00000605717 526 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AL451049.1-201ENST00000608672 497 ntBASIC6.92□□□□□ -1.3
BDNFP23560 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 uc_338.29-201ENST00000615099 168 ntBASIC6.92□□□□□ -1.3
BDNFP23560 AC005393.1-201ENST00000617916 584 ntBASIC6.92□□□□□ -1.3
BDNFP23560 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-368P-201ENST00000620928 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 RNU6-538P-201ENST00000622329 107 ntBASIC6.92□□□□□ -1.3
BDNFP23560 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.92□□□□□ -1.3
BDNFP23560 AL596275.2-207ENST00000641188 675 ntBASIC6.92□□□□□ -1.3
BDNFP23560 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BDNFP23560 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.92□□□□□ -1.3
BDNFP23560 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 AL031651.1-201ENST00000615357 1438 ntBASIC6.92□□□□□ -1.3
BDNFP23560 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.92□□□□□ -1.3
BDNFP23560 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BDNFP23560 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BDNFP23560 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
BDNFP23560 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 AC097461.1-201ENST00000568928 2821 ntBASIC6.91□□□□□ -1.3
BDNFP23560 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.91□□□□□ -1.3
BDNFP23560 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.91□□□□□ -1.3
BDNFP23560 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 CASC19-228ENST00000641414 1684 ntBASIC6.91□□□□□ -1.3
BDNFP23560 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
BDNFP23560 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.91□□□□□ -1.3
BDNFP23560 FUNDC2P3-201ENST00000334716 533 ntBASIC6.91□□□□□ -1.3
BDNFP23560 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
BDNFP23560 AC099535.1-201ENST00000408928 371 ntBASIC6.91□□□□□ -1.3
BDNFP23560 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BDNFP23560 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.91□□□□□ -1.3
BDNFP23560 AL360013.1-201ENST00000419031 858 ntBASIC6.91□□□□□ -1.3
BDNFP23560 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.91□□□□□ -1.3
BDNFP23560 RCC2P2-201ENST00000422174 918 ntBASIC6.91□□□□□ -1.3
BDNFP23560 AC083862.1-201ENST00000427378 1242 ntBASIC6.91□□□□□ -1.3
BDNFP23560 Z68868.1-201ENST00000429048 544 ntBASIC6.91□□□□□ -1.3
BDNFP23560 BMP6P1-201ENST00000431230 679 ntBASIC6.91□□□□□ -1.3
BDNFP23560 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.91□□□□□ -1.3
BDNFP23560 GTF3AP6-201ENST00000432585 986 ntBASIC6.91□□□□□ -1.3
BDNFP23560 AC010086.1-201ENST00000437359 1052 ntBASIC6.91□□□□□ -1.3
BDNFP23560 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.91□□□□□ -1.3
BDNFP23560 RBMY2TP-201ENST00000451162 947 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms