Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL359742.1-201ENST00000622497 540 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AL109924.4-201ENST00000623089 670 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AP000577.1-201ENST00000624366 878 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXD4P09016 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
HOXD4P09016 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXD4P09016 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXD4P09016 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
HOXD4P09016 MTND5P12-201ENST00000502851 1449 ntBASIC5.9□□□□□ -1.47
HOXD4P09016 AC005702.3-201ENST00000585345 1447 ntBASIC5.9□□□□□ -1.47
HOXD4P09016 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
HOXD4P09016 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXD4P09016 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXD4P09016 AC232271.1-201ENST00000602455 2715 ntBASIC5.9□□□□□ -1.47
HOXD4P09016 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.9□□□□□ -1.47
HOXD4P09016 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXD4P09016 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HOXD4P09016 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 NLRP3P1-201ENST00000622303 1785 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 RNU1-84P-201ENST00000365447 164 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 RNA5SP198-201ENST00000410376 127 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 RN7SL552P-201ENST00000462094 276 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AP002884.1-201ENST00000479691 655 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 RPL19P11-201ENST00000495944 589 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 H3F3AP3-201ENST00000497682 407 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 AP000662.1-201ENST00000530952 487 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 AP001542.1-201ENST00000591314 200 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AL589765.6-201ENST00000601909 549 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 SNORD96A-201ENST00000606577 79 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AC005277.2-201ENST00000617898 390 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 MIR6085-201ENST00000618314 110 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AL122023.1-201ENST00000622847 530 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AC022400.9-201ENST00000623633 273 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 AC114546.4-201ENST00000624413 369 ntBASIC5.89□□□□□ -1.47
HOXD4P09016 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXD4P09016 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HOXD4P09016 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXD4P09016 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXD4P09016 AP001157.1-201ENST00000550837 2339 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 AC015799.1-201ENST00000622996 3122 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.88□□□□□ -1.47
HOXD4P09016 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HOXD4P09016 RNA5SP435-201ENST00000364044 108 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 YWHAZP4-201ENST00000392459 708 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 RN7SKP240-201ENST00000410583 375 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 VN1R20P-201ENST00000425215 966 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.88□□□□□ -1.47
HOXD4P09016 GTF3AP6-201ENST00000432585 986 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXD4P09016 GAPDHP59-201ENST00000435908 267 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 HMGN1P2-201ENST00000445197 310 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 UGT2A3P7-201ENST00000510485 734 ntBASIC5.88□□□□□ -1.47
HOXD4P09016 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXD4P09016 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms