Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CACNB4-263ENST00000637779 1772 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 STX2-203ENST00000392373 2151 ntAPPRIS P4 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 HSPD1P9-201ENST00000420325 1636 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC116158.1-201ENST00000560231 2129 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 MITF-203ENST00000328528 4680 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC079061.1-201ENST00000499579 3075 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 STAT2-202ENST00000418572 1548 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 C1orf87-201ENST00000371201 2028 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ZNF680-201ENST00000309683 3022 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 CU633906.2-205ENST00000624847 1468 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 FER-209ENST00000618353 1420 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RNU5D-1-201ENST00000363299 116 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RN7SKP50-201ENST00000364694 315 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LEMD1-202ENST00000367151 869 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RIT1-201ENST00000368322 855 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OR52E6-202ENST00000379946 954 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RNU6-1300P-201ENST00000391046 108 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LEMD1-206ENST00000391936 727 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 ATP5F1P4-201ENST00000397288 746 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 CES5AP1-201ENST00000400418 859 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL590143.1-201ENST00000405071 138 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RN7SKP261-201ENST00000410948 278 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 USP9YP33-201ENST00000412220 421 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC245060.4-201ENST00000413293 1121 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL157698.1-201ENST00000415190 1011 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 Z99497.1-201ENST00000421282 135 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MTCYBP5-201ENST00000423752 1135 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 OFD1P13Y-201ENST00000431179 1232 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 TMX2P1-201ENST00000436507 708 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RPS10P3-201ENST00000439253 494 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MIR4435-2HG-211ENST00000443467 826 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC023271.1-201ENST00000445936 1090 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 NPM1P49-201ENST00000448027 714 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RPL5P32-201ENST00000454085 879 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 SNRPGP9-201ENST00000456025 225 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC008026.1-201ENST00000460492 447 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC123768.1-202ENST00000460684 461 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RN7SL685P-201ENST00000476271 298 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC116337.2-201ENST00000477662 156 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 GGTA1P-204ENST00000488429 1104 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LINC01411-204ENST00000510234 938 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 RDH10-203ENST00000519380 978 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC107959.3-202ENST00000523806 450 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AP006587.2-201ENST00000530696 493 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 LINC02443-201ENST00000536518 585 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 STH-201ENST00000537309 445 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AP002383.5-201ENST00000542623 1161 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 THAP2-202ENST00000547843 672 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AL132712.1-201ENST00000555967 582 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC245505.1-201ENST00000556398 224 ntBASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC140Q96MF4 AC012414.6-201ENST00000568241 401 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms