Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC026124.2-201ENST00000621847 656 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AP001052.1-201ENST00000626421 99 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AC011471.4-201ENST00000638271 216 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 OR7E161P-202ENST00000641994 1033 ntBASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.56□□□□□ -1.52
PDLIM3Q53GG5 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AP003486.1-201ENST00000525716 3994 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RNA5SP433-201ENST00000364491 114 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 MIR99A-201ENST00000384906 81 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AL353133.1-201ENST00000407695 401 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RPL18AP14-201ENST00000417685 526 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 NSRP1-205ENST00000479218 540 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC104109.1-201ENST00000498563 436 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 CCNHP1-201ENST00000513311 678 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC093816.1-201ENST00000515076 913 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 HNRNPRP2-201ENST00000528421 743 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC135626.1-201ENST00000556983 435 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC007255.2-201ENST00000604053 631 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 GAPDHP41-201ENST00000613707 975 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 SNX18P10-201ENST00000625014 519 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AL356585.10-201ENST00000641883 123 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AL139384.2-201ENST00000613809 3590 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 IFIT1P1-201ENST00000400497 1449 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 AC022905.1-201ENST00000503430 3048 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 PROS2P-201ENST00000474651 1951 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 KARSP1-201ENST00000451871 1752 ntBASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.55□□□□□ -1.52
PDLIM3Q53GG5 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 PARP4P1-201ENST00000435945 2337 ntBASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PDLIM3Q53GG5 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms