Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC88AQ3V6T2 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC008171.1-201ENST00000395058 200 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AL590763.1-201ENST00000398297 1545 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 NPM1P4-201ENST00000414095 812 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC062022.1-201ENST00000451026 1684 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 GEMIN2P1-201ENST00000454246 752 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC092865.4-201ENST00000477936 615 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 NENFP3-201ENST00000503735 313 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC013488.1-201ENST00000526618 1838 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AL356801.1-201ENST00000559320 294 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 STARD6-202ENST00000577499 696 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 AL589674.2-201ENST00000604304 337 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 RAD17P2-201ENST00000451754 1977 ntBASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC88AQ3V6T2 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 RN7SKP59-201ENST00000410520 314 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 Y_RNA.625-201ENST00000411256 107 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 GAS5-202ENST00000414075 413 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 BMS1P17-202ENST00000416720 316 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 OR10G5P-201ENST00000532733 358 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 HAUS8P1-201ENST00000549005 542 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL390726.5-202ENST00000564800 256 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 RPS2P45-201ENST00000469997 2057 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL359694.2-201ENST00000567753 1615 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC027279.4-201ENST00000624371 2072 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL139156.3-201ENST00000454802 394 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 RPS23P6-201ENST00000466136 431 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC026254.2-201ENST00000475295 371 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 NDUFA5P12-201ENST00000503796 343 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 MIR5095-201ENST00000578844 88 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 AC013731.1-201ENST00000604340 883 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 RPL12P48-201ENST00000605620 304 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC88AQ3V6T2 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 RNA5SP234-201ENST00000363916 119 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 MIR640-201ENST00000385086 96 ntBASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC88AQ3V6T2 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC7.61□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms