Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL445647.2-201ENST00000615170 130 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AC087565.3-203ENST00000641018 837 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 OR11H2-202ENST00000641517 1085 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 MLYCD-201ENST00000262430 13038 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 AL359091.1-201ENST00000449048 1734 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.94□□□□□ -1.14
COL18A1P39060 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL18A1P39060 HMGB3P24-201ENST00000433260 622 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 RPS7P3-201ENST00000443360 580 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 YWHABP1-201ENST00000445359 727 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 FRG2FP-204ENST00000453982 852 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 RN7SL826P-201ENST00000479724 288 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 OR7E157P-201ENST00000494376 911 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AC008953.1-201ENST00000497334 318 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC025470.1-201ENST00000510053 2032 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.94□□□□□ -1.14
COL18A1P39060 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.94□□□□□ -1.14
COL18A1P39060 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.94□□□□□ -1.14
COL18A1P39060 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.94□□□□□ -1.14
COL18A1P39060 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
COL18A1P39060 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.93□□□□□ -1.14
COL18A1P39060 SNRPEP6-201ENST00000407465 277 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.93□□□□□ -1.14
COL18A1P39060 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.93□□□□□ -1.14
COL18A1P39060 CFL1P1-202ENST00000432948 411 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC7.93□□□□□ -1.14
COL18A1P39060 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC7.93□□□□□ -1.14
COL18A1P39060 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC7.93□□□□□ -1.14
COL18A1P39060 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.93□□□□□ -1.14
COL18A1P39060 AC024255.1-201ENST00000614376 102 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 UGT2B27P-201ENST00000505092 1620 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 AP002370.1-201ENST00000528055 1602 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.93□□□□□ -1.14
COL18A1P39060 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.93□□□□□ -1.14
COL18A1P39060 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.93□□□□□ -1.14
COL18A1P39060 AP002364.1-201ENST00000623330 3386 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL18A1P39060 AC011369.2-201ENST00000624423 1567 ntBASIC7.93□□□□□ -1.14
COL18A1P39060 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC7.92□□□□□ -1.14
COL18A1P39060 DIO2-202ENST00000438257 6136 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 AL359976.1-201ENST00000418655 3528 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 RN7SKP166-201ENST00000410812 305 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.92□□□□□ -1.14
COL18A1P39060 MRPL53P1-201ENST00000414323 319 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 PTCD2P2-201ENST00000415579 1095 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 AL022331.1-201ENST00000429025 477 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 LRRC37A14P-201ENST00000452297 462 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.92□□□□□ -1.14
COL18A1P39060 RN7SL222P-201ENST00000476452 299 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.92□□□□□ -1.14
COL18A1P39060 TXNP4-201ENST00000575018 310 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 MIR8089-201ENST00000620165 82 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 RNA5SP443-201ENST00000363083 132 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 OR2AT2P-201ENST00000413438 905 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
COL18A1P39060 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.92□□□□□ -1.14
COL18A1P39060 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC7.92□□□□□ -1.14
COL18A1P39060 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.92□□□□□ -1.14
COL18A1P39060 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.92□□□□□ -1.14
COL18A1P39060 OR4H6P-201ENST00000563771 921 ntBASIC7.92□□□□□ -1.14
COL18A1P39060 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.92□□□□□ -1.14
COL18A1P39060 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
COL18A1P39060 AL080317.3-201ENST00000607434 4315 ntBASIC7.92□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms