Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 AP000641.1-201ENST00000531988 1639 ntBASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC3Q9BQI4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.4
CCDC3Q9BQI4 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC008171.1-201ENST00000395058 200 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL139805.1-201ENST00000407837 289 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC083906.1-201ENST00000509298 406 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 UGT2A3P7-201ENST00000510485 734 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC022616.2-201ENST00000523185 300 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL138895.2-201ENST00000603019 178 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL953862.2-201ENST00000603089 820 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AC005393.1-201ENST00000617916 584 ntBASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC3Q9BQI4 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 RN7SKP275-201ENST00000364626 301 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL035696.2-201ENST00000407941 709 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL713922.1-201ENST00000416477 747 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC003989.1-201ENST00000434569 565 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 DNAJA1P5-201ENST00000440278 943 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL645936.1-201ENST00000441979 518 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL139156.3-201ENST00000454802 394 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC009963.3-201ENST00000458090 486 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 SNX18P24-201ENST00000505249 671 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC009879.1-201ENST00000520029 839 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC090115.2-201ENST00000548060 883 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 OR7A8P-201ENST00000595427 913 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL161912.3-201ENST00000605404 628 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AL365181.4-201ENST00000609800 547 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC012653.2-201ENST00000621880 420 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC087821.1-201ENST00000623639 567 ntBASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC3Q9BQI4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms