Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC211433.2-201ENST00000608433 387 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 MIR6730-201ENST00000622213 67 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
COL18A1P39060 SALL4P7-201ENST00000555779 3120 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 LINC01963-201ENST00000562038 3148 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.97□□□□□ -1.13
COL18A1P39060 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 AC092821.3-202ENST00000641304 2767 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7.97□□□□□ -1.13
COL18A1P39060 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC7.97□□□□□ -1.13
COL18A1P39060 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
COL18A1P39060 RNA5SP478-201ENST00000364657 115 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 NME1P1-201ENST00000420914 382 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 NIPA2P1-201ENST00000426223 976 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 AL390119.1-201ENST00000440329 312 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.97□□□□□ -1.13
COL18A1P39060 AP001496.3-201ENST00000580230 913 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC7.97□□□□□ -1.13
COL18A1P39060 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.97□□□□□ -1.13
COL18A1P39060 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL18A1P39060 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC7.96□□□□□ -1.13
COL18A1P39060 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC7.96□□□□□ -1.13
COL18A1P39060 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL18A1P39060 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.96□□□□□ -1.13
COL18A1P39060 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL18A1P39060 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.96□□□□□ -1.13
COL18A1P39060 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL18A1P39060 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL18A1P39060 U3.2-201ENST00000362981 210 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 RN7SKP29-201ENST00000410957 272 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 GABARAPL3-201ENST00000412799 354 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 NANOGP4-201ENST00000427230 913 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 Z84478.1-201ENST00000438230 1219 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 RN7SL57P-201ENST00000493687 290 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 MIR1269B-201ENST00000580405 75 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.96□□□□□ -1.14
COL18A1P39060 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.96□□□□□ -1.14
COL18A1P39060 AC003992.1-201ENST00000635364 557 ntBASIC7.96□□□□□ -1.14
COL18A1P39060 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.96□□□□□ -1.14
COL18A1P39060 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL18A1P39060 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL18A1P39060 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
COL18A1P39060 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.96□□□□□ -1.14
COL18A1P39060 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.96□□□□□ -1.14
COL18A1P39060 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.14
COL18A1P39060 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.14
COL18A1P39060 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL18A1P39060 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.96□□□□□ -1.14
COL18A1P39060 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.14
COL18A1P39060 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
COL18A1P39060 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC7.95□□□□□ -1.14
COL18A1P39060 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 RN7SKP59-201ENST00000410520 314 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC7.95□□□□□ -1.14
COL18A1P39060 RPS12P17-201ENST00000438591 377 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC7.95□□□□□ -1.14
COL18A1P39060 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 SNORA43.3-201ENST00000517240 103 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC7.95□□□□□ -1.14
COL18A1P39060 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.95□□□□□ -1.14
COL18A1P39060 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.95□□□□□ -1.14
COL18A1P39060 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 AL691477.1-201ENST00000624398 162 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 AC096921.2-201ENST00000561507 1916 ntBASIC7.95□□□□□ -1.14
COL18A1P39060 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.95□□□□□ -1.14
COL18A1P39060 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL18A1P39060 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
COL18A1P39060 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.95□□□□□ -1.14
COL18A1P39060 LINC02019-201ENST00000608605 2060 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 OR2W4P-201ENST00000406496 926 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 SPTLC1P2-201ENST00000407089 121 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 VDAC1P2-201ENST00000423609 850 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AC113412.1-201ENST00000425840 504 ntBASIC7.94□□□□□ -1.14
COL18A1P39060 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.94□□□□□ -1.14
COL18A1P39060 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.94□□□□□ -1.14
COL18A1P39060 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.94□□□□□ -1.14
COL18A1P39060 AC007204.2-201ENST00000615022 616 ntBASIC7.94□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms