Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
CUX1P39880 AL445649.1-201ENST00000615941 691 ntBASIC10.23□□□□□ -0.77
CUX1P39880 AC016769.4-201ENST00000616893 535 ntBASIC10.23□□□□□ -0.77
CUX1P39880 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC10.23□□□□□ -0.77
CUX1P39880 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC10.23□□□□□ -0.77
CUX1P39880 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC10.23□□□□□ -0.77
CUX1P39880 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
CUX1P39880 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC10.23□□□□□ -0.77
CUX1P39880 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC10.23□□□□□ -0.77
CUX1P39880 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC10.23□□□□□ -0.77
CUX1P39880 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
CUX1P39880 ING3-204ENST00000431467 1447 ntTSL 2 BASIC10.23□□□□□ -0.77
CUX1P39880 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 RNA5SP234-201ENST00000363916 119 ntBASIC10.23□□□□□ -0.77
CUX1P39880 RNU105B-201ENST00000364478 208 ntBASIC10.23□□□□□ -0.77
CUX1P39880 RNU11-6P-201ENST00000391127 133 ntBASIC10.23□□□□□ -0.77
CUX1P39880 AC016739.1-201ENST00000405359 345 ntBASIC10.23□□□□□ -0.77
CUX1P39880 UBE2V1P14-201ENST00000415815 558 ntBASIC10.23□□□□□ -0.77
CUX1P39880 NMD3P2-201ENST00000421815 761 ntBASIC10.23□□□□□ -0.77
CUX1P39880 CCNB1IP1P1-201ENST00000428976 839 ntBASIC10.23□□□□□ -0.77
CUX1P39880 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
CUX1P39880 AC012254.5-201ENST00000623573 478 ntBASIC10.23□□□□□ -0.77
CUX1P39880 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC10.22□□□□□ -0.77
CUX1P39880 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
CUX1P39880 MEP1B-201ENST00000269202 2312 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC10.22□□□□□ -0.77
CUX1P39880 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 EEF1B2P6-201ENST00000445713 673 ntBASIC10.22□□□□□ -0.77
CUX1P39880 RN7SL72P-201ENST00000460697 269 ntBASIC10.22□□□□□ -0.77
CUX1P39880 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC10.22□□□□□ -0.77
CUX1P39880 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
CUX1P39880 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC10.22□□□□□ -0.77
CUX1P39880 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC10.22□□□□□ -0.77
CUX1P39880 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC10.22□□□□□ -0.77
CUX1P39880 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CUX1P39880 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CUX1P39880 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CUX1P39880 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CUX1P39880 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC10.21□□□□□ -0.77
CUX1P39880 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
CUX1P39880 PDZK1P1-202ENST00000425209 1350 ntBASIC10.21□□□□□ -0.77
CUX1P39880 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC10.21□□□□□ -0.78
CUX1P39880 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
CUX1P39880 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 SELENOWP1-201ENST00000322792 252 ntBASIC10.21□□□□□ -0.78
CUX1P39880 AK4P4-201ENST00000419465 646 ntBASIC10.21□□□□□ -0.78
CUX1P39880 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC10.21□□□□□ -0.78
CUX1P39880 CYCSP51-201ENST00000443545 318 ntBASIC10.21□□□□□ -0.78
CUX1P39880 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX1P39880 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX1P39880 RPL32P9-201ENST00000487963 407 ntBASIC10.21□□□□□ -0.78
CUX1P39880 AC006499.3-201ENST00000506077 748 ntBASIC10.21□□□□□ -0.78
CUX1P39880 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC10.21□□□□□ -0.78
CUX1P39880 AL035661.1-201ENST00000620459 1144 ntBASIC10.21□□□□□ -0.78
CUX1P39880 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC10.21□□□□□ -0.78
CUX1P39880 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC10.21□□□□□ -0.78
CUX1P39880 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
CUX1P39880 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
CUX1P39880 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 MROH3P-201ENST00000435735 2676 ntBASIC10.2□□□□□ -0.78
CUX1P39880 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC10.2□□□□□ -0.78
CUX1P39880 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CUX1P39880 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX1P39880 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC10.2□□□□□ -0.78
CUX1P39880 AC114728.1-201ENST00000488289 483 ntBASIC10.2□□□□□ -0.78
CUX1P39880 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC10.2□□□□□ -0.78
CUX1P39880 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC10.2□□□□□ -0.78
CUX1P39880 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms