Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC7.39□□□□□ -1.23
SCN4AP35499 RAD17P2-201ENST00000451754 1977 ntBASIC7.39□□□□□ -1.23
SCN4AP35499 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
SCN4AP35499 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
SCN4AP35499 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
SCN4AP35499 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SCN4AP35499 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
SCN4AP35499 RNU1-46P-201ENST00000384425 164 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AC009784.1-201ENST00000426484 460 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 RPS23P6-201ENST00000466136 431 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 MIR4505-201ENST00000582238 73 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.38□□□□□ -1.23
SCN4AP35499 AC183089.2-201ENST00000637931 916 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC7.38□□□□□ -1.23
SCN4AP35499 CUBNP3-201ENST00000457461 1784 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
SCN4AP35499 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 AC117409.1-201ENST00000470499 1310 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AL161901.1-201ENST00000624954 3425 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.38□□□□□ -1.23
SCN4AP35499 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 AP002364.1-201ENST00000623330 3386 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC7.38□□□□□ -1.23
SCN4AP35499 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 RNU4ATAC2P-201ENST00000408674 126 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
SCN4AP35499 GAPDHP23-201ENST00000444823 993 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 DEFA11P-201ENST00000446470 261 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 MORF4-201ENST00000447135 971 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 DUTP7-201ENST00000507982 486 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 GAPDHP71-201ENST00000511530 1003 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AC074087.1-201ENST00000512059 724 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.38□□□□□ -1.23
SCN4AP35499 AP001496.3-201ENST00000580230 913 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 AL953862.2-201ENST00000603089 820 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 FO393422.1-201ENST00000603908 708 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
SCN4AP35499 CU639417.4-201ENST00000623928 207 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.38□□□□□ -1.23
SCN4AP35499 AC119674.1-217ENST00000641942 1086 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.38□□□□□ -1.23
SCN4AP35499 AC092821.3-202ENST00000641304 2767 ntBASIC7.38□□□□□ -1.23
SCN4AP35499 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SCN4AP35499 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.38□□□□□ -1.23
SCN4AP35499 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
SCN4AP35499 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.37□□□□□ -1.23
SCN4AP35499 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.37□□□□□ -1.23
SCN4AP35499 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 KIF4CP-201ENST00000422742 1279 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.37□□□□□ -1.23
SCN4AP35499 AC091965.3-201ENST00000506236 208 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC7.37□□□□□ -1.23
SCN4AP35499 SUMO2P7-201ENST00000511179 285 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC7.37□□□□□ -1.23
SCN4AP35499 WBP1LP3-201ENST00000523033 208 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.37□□□□□ -1.23
SCN4AP35499 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC7.37□□□□□ -1.23
SCN4AP35499 AC009120.3-201ENST00000563335 499 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.37□□□□□ -1.23
SCN4AP35499 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
SCN4AP35499 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.37□□□□□ -1.23
SCN4AP35499 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 PDZK1P1-202ENST00000425209 1350 ntBASIC7.37□□□□□ -1.23
SCN4AP35499 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SCN4AP35499 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SCN4AP35499 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
SCN4AP35499 RNA5SP375-201ENST00000362975 119 ntBASIC7.36□□□□□ -1.23
SCN4AP35499 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.36□□□□□ -1.23
SCN4AP35499 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC7.36□□□□□ -1.23
SCN4AP35499 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.36□□□□□ -1.23
SCN4AP35499 SPRYD7P1-201ENST00000443861 570 ntBASIC7.36□□□□□ -1.23
SCN4AP35499 RNA5SP92-201ENST00000516437 110 ntBASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms