Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC109309.2-201ENST00000612597 332 ntBASIC8.26□□□□□ -1.09
HOXC9P31274 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC8.26□□□□□ -1.09
HOXC9P31274 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
HOXC9P31274 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC8.26□□□□□ -1.09
HOXC9P31274 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC8.26□□□□□ -1.09
HOXC9P31274 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
HOXC9P31274 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 AC025809.2-201ENST00000625085 1802 ntBASIC8.26□□□□□ -1.09
HOXC9P31274 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC8.26□□□□□ -1.09
HOXC9P31274 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HOXC9P31274 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC8.25□□□□□ -1.09
HOXC9P31274 MTCO1P11-201ENST00000429111 1528 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
HOXC9P31274 BX284632.2-201ENST00000421091 399 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 BX323845.3-201ENST00000428215 527 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 RPL12P16-201ENST00000431098 498 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 AL512605.1-202ENST00000441919 381 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 AC016908.1-201ENST00000442571 1219 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 AL359955.2-201ENST00000445380 353 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 VN1R38P-201ENST00000450265 887 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC8.25□□□□□ -1.09
HOXC9P31274 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC8.25□□□□□ -1.09
HOXC9P31274 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC8.25□□□□□ -1.09
HOXC9P31274 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC8.25□□□□□ -1.09
HOXC9P31274 AC233702.7-202ENST00000582941 211 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC8.25□□□□□ -1.09
HOXC9P31274 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC8.25□□□□□ -1.09
HOXC9P31274 AC009237.12-201ENST00000604755 742 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 AC126175.1-201ENST00000617041 758 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 MAPK10-344ENST00000641718 3746 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 AC119674.1-202ENST00000641333 1860 ntBASIC8.25□□□□□ -1.09
HOXC9P31274 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
HOXC9P31274 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC8.25□□□□□ -1.09
HOXC9P31274 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
HOXC9P31274 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC8.24□□□□□ -1.09
HOXC9P31274 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
HOXC9P31274 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC8.24□□□□□ -1.09
HOXC9P31274 TRIM60P16-201ENST00000444048 694 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC8.24□□□□□ -1.09
HOXC9P31274 MGAT2P1-201ENST00000449718 797 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 SNX18P26-201ENST00000458433 740 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC8.24□□□□□ -1.09
HOXC9P31274 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC073916.1-201ENST00000545095 130 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC8.24□□□□□ -1.09
HOXC9P31274 AL645933.2-201ENST00000606743 1207 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC8.24□□□□□ -1.09
HOXC9P31274 AL357562.1-201ENST00000624911 609 ntBASIC8.24□□□□□ -1.09
HOXC9P31274 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC8.24□□□□□ -1.09
HOXC9P31274 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC8.24□□□□□ -1.09
HOXC9P31274 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC8.24□□□□□ -1.09
HOXC9P31274 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC8.24□□□□□ -1.09
HOXC9P31274 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
HOXC9P31274 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 MAGEB16-205ENST00000399992 1734 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC8.23□□□□□ -1.09
HOXC9P31274 AC062029.1-202ENST00000606164 3651 ntBASIC8.23□□□□□ -1.09
HOXC9P31274 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.23□□□□□ -1.09
HOXC9P31274 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC8.23□□□□□ -1.09
HOXC9P31274 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC8.23□□□□□ -1.09
HOXC9P31274 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms