Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 RNA5SP346-201ENST00000363541 121 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
HOXC4P09017 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 U3.43-201ENST00000410734 213 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 RNU4-64P-201ENST00000410795 131 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 RN7SKP144-201ENST00000411108 279 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 RNA5SP115-201ENST00000411160 107 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 RPS7P14-201ENST00000426405 583 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 AC069154.1-201ENST00000432914 542 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 HIGD1AP16-201ENST00000450986 258 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 AL133351.3-201ENST00000454998 193 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 Z83838.1-202ENST00000456225 839 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC4P09017 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC4P09017 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXC4P09017 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HOXC4P09017 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC4P09017 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXC4P09017 AP005136.2-201ENST00000583253 1049 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC4P09017 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC4P09017 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC4P09017 CYCSP1-201ENST00000604815 315 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC4P09017 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 IFIT1P1-201ENST00000400497 1449 ntBASIC6.22□□□□□ -1.41
HOXC4P09017 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC4P09017 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.22□□□□□ -1.41
HOXC4P09017 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXC4P09017 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC4P09017 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC4P09017 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC4P09017 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC4P09017 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
HOXC4P09017 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.21□□□□□ -1.41
HOXC4P09017 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 AL136531.3-201ENST00000624378 3658 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 RNA5SP433-201ENST00000364491 114 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 RNA5SP478-201ENST00000364657 115 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXC4P09017 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXC4P09017 PNKDP1-201ENST00000435914 430 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC4P09017 RPL5P10-201ENST00000445207 894 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC4P09017 OR7E99P-201ENST00000505750 922 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC090958.1-201ENST00000511122 351 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 IGHV1-14-201ENST00000523391 241 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC4P09017 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC073916.1-201ENST00000545095 130 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 AL121579.2-201ENST00000555466 590 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 AC009120.3-201ENST00000563335 499 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXC4P09017 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC4P09017 AC079315.1-201ENST00000602952 623 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 MIR1910-201ENST00000636955 80 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXC4P09017 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC4P09017 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC4P09017 MAPK10-287ENST00000641217 3037 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 CYP2G2P-201ENST00000594920 1485 ntBASIC6.21□□□□□ -1.42
HOXC4P09017 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC4P09017 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC4P09017 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC4P09017 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.2□□□□□ -1.42
HOXC4P09017 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms