Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SLC25A24-204ENST00000569674 2357 ntBASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ESRRAP1-201ENST00000400596 1257 ntBASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 AC026366.1-201ENST00000488803 879 ntBASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 PHGDH-210ENST00000641115 1638 ntBASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.67■■□□□ 1.06
PCIF1Q9H4Z3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PCIF1Q9H4Z3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 AC018553.1-201ENST00000616682 1458 ntBASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 TSPY20P-201ENST00000450910 630 ntBASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
PCIF1Q9H4Z3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PCIF1Q9H4Z3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 POM121L13P-201ENST00000422362 380 ntBASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 AC233263.1-201ENST00000578059 224 ntBASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCIF1Q9H4Z3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms