Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDX2Q99626 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CDX2Q99626 SPDYE13P-201ENST00000445314 798 ntBASIC20.86■□□□□ 0.93
CDX2Q99626 AC079781.3-201ENST00000449110 356 ntBASIC20.86■□□□□ 0.93
CDX2Q99626 AC092183.1-201ENST00000469884 875 ntBASIC20.86■□□□□ 0.93
CDX2Q99626 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.86■□□□□ 0.93
CDX2Q99626 MIR3180-1-201ENST00000580374 94 ntBASIC20.86■□□□□ 0.93
CDX2Q99626 MIR3180-3-201ENST00000584616 94 ntBASIC20.86■□□□□ 0.93
CDX2Q99626 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.86■□□□□ 0.93
CDX2Q99626 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CDX2Q99626 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.86■□□□□ 0.93
CDX2Q99626 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CDX2Q99626 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDX2Q99626 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.86■□□□□ 0.93
CDX2Q99626 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDX2Q99626 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.86■□□□□ 0.93
CDX2Q99626 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDX2Q99626 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.85■□□□□ 0.93
CDX2Q99626 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 TUBB8P6-201ENST00000436895 1288 ntBASIC20.85■□□□□ 0.93
CDX2Q99626 NUS1P1-201ENST00000446295 882 ntBASIC20.85■□□□□ 0.93
CDX2Q99626 TSSC2-201ENST00000450217 709 ntBASIC20.85■□□□□ 0.93
CDX2Q99626 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.85■□□□□ 0.93
CDX2Q99626 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.85■□□□□ 0.93
CDX2Q99626 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.85■□□□□ 0.93
CDX2Q99626 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDX2Q99626 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.85■□□□□ 0.93
CDX2Q99626 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.85■□□□□ 0.93
CDX2Q99626 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDX2Q99626 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CDX2Q99626 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.84■□□□□ 0.93
CDX2Q99626 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CDX2Q99626 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CDX2Q99626 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CDX2Q99626 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.84■□□□□ 0.93
CDX2Q99626 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.84■□□□□ 0.93
CDX2Q99626 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDX2Q99626 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.83■□□□□ 0.93
CDX2Q99626 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.83■□□□□ 0.93
CDX2Q99626 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CDX2Q99626 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.83■□□□□ 0.93
CDX2Q99626 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDX2Q99626 AP000523.1-201ENST00000398242 1049 ntBASIC20.83■□□□□ 0.93
CDX2Q99626 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.83■□□□□ 0.93
CDX2Q99626 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.83■□□□□ 0.93
CDX2Q99626 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.83■□□□□ 0.93
CDX2Q99626 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDX2Q99626 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.83■□□□□ 0.92
CDX2Q99626 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 PTBP1P-201ENST00000554374 1601 ntBASIC20.82■□□□□ 0.92
CDX2Q99626 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 KRT8P20-201ENST00000423953 1409 ntBASIC20.82■□□□□ 0.92
CDX2Q99626 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.82■□□□□ 0.92
CDX2Q99626 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.82■□□□□ 0.92
CDX2Q99626 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.82■□□□□ 0.92
CDX2Q99626 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 AC106795.1-205ENST00000512851 1056 ntBASIC20.82■□□□□ 0.92
CDX2Q99626 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.82■□□□□ 0.92
CDX2Q99626 SLC25A6P4-201ENST00000586535 553 ntBASIC20.82■□□□□ 0.92
CDX2Q99626 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDX2Q99626 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.82■□□□□ 0.92
CDX2Q99626 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX2Q99626 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.81■□□□□ 0.92
CDX2Q99626 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.81■□□□□ 0.92
CDX2Q99626 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.81■□□□□ 0.92
CDX2Q99626 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 GCSHP2-201ENST00000560971 527 ntBASIC20.81■□□□□ 0.92
CDX2Q99626 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX2Q99626 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 AL732292.2-201ENST00000609649 430 ntBASIC20.81■□□□□ 0.92
CDX2Q99626 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
CDX2Q99626 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX2Q99626 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDX2Q99626 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms