Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 DUX4L16-201ENST00000555130 1264 ntBASIC14.81□□□□□ -0.04
LINC00477Q96M19 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 AC018445.3-201ENST00000624177 1945 ntBASIC14.81□□□□□ -0.04
LINC00477Q96M19 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 AC005332.7-201ENST00000614046 2005 ntBASIC14.81□□□□□ -0.04
LINC00477Q96M19 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.81□□□□□ -0.04
LINC00477Q96M19 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00477Q96M19 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 CYP2T3P-201ENST00000601990 817 ntBASIC14.8□□□□□ -0.04
LINC00477Q96M19 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 AC231657.2-201ENST00000624556 255 ntBASIC14.8□□□□□ -0.04
LINC00477Q96M19 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 BCL2-203ENST00000589955 5011 ntBASIC14.8□□□□□ -0.04
LINC00477Q96M19 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LINC00477Q96M19 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00477Q96M19 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 CNN2P6-201ENST00000439038 900 ntBASIC14.79□□□□□ -0.04
LINC00477Q96M19 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 AC023632.3-201ENST00000521633 145 ntBASIC14.79□□□□□ -0.04
LINC00477Q96M19 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00477Q96M19 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC14.79□□□□□ -0.04
LINC00477Q96M19 AC087623.3-201ENST00000607047 1098 ntBASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms