Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
RTF1Q92541 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.88■■□□□ 1.73
RTF1Q92541 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC25.88■■□□□ 1.73
RTF1Q92541 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
RTF1Q92541 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
RTF1Q92541 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
RTF1Q92541 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
RTF1Q92541 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
RTF1Q92541 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC25.87■■□□□ 1.73
RTF1Q92541 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC25.87■■□□□ 1.73
RTF1Q92541 AP002982.1-201ENST00000492365 877 ntBASIC25.87■■□□□ 1.73
RTF1Q92541 CD177P1-201ENST00000606252 935 ntBASIC25.87■■□□□ 1.73
RTF1Q92541 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC25.87■■□□□ 1.73
RTF1Q92541 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RTF1Q92541 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
RTF1Q92541 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
RTF1Q92541 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
RTF1Q92541 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
RTF1Q92541 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 AC073195.1-201ENST00000607241 877 ntBASIC25.86■■□□□ 1.73
RTF1Q92541 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC25.86■■□□□ 1.73
RTF1Q92541 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
RTF1Q92541 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC25.86■■□□□ 1.73
RTF1Q92541 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RTF1Q92541 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
RTF1Q92541 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RTF1Q92541 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RTF1Q92541 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
RTF1Q92541 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.85■■□□□ 1.73
RTF1Q92541 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
RTF1Q92541 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RTF1Q92541 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RTF1Q92541 AP005212.1-201ENST00000581547 1997 ntBASIC25.85■■□□□ 1.73
RTF1Q92541 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
RTF1Q92541 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC25.85■■□□□ 1.73
RTF1Q92541 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC25.85■■□□□ 1.73
RTF1Q92541 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
RTF1Q92541 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
RTF1Q92541 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
RTF1Q92541 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
RTF1Q92541 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 FAM197Y1-201ENST00000421178 764 ntBASIC25.84■■□□□ 1.73
RTF1Q92541 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.84■■□□□ 1.73
RTF1Q92541 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 AL353708.3-201ENST00000610272 989 ntBASIC25.84■■□□□ 1.73
RTF1Q92541 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC25.84■■□□□ 1.73
RTF1Q92541 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC25.84■■□□□ 1.73
RTF1Q92541 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RTF1Q92541 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.73
RTF1Q92541 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC25.83■■□□□ 1.73
RTF1Q92541 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
RTF1Q92541 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 YBX1P10-201ENST00000444752 975 ntBASIC25.83■■□□□ 1.73
RTF1Q92541 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
RTF1Q92541 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.83■■□□□ 1.73
RTF1Q92541 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.83■■□□□ 1.73
RTF1Q92541 AC026471.5-201ENST00000615068 467 ntBASIC25.83■■□□□ 1.73
RTF1Q92541 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RTF1Q92541 CD37-204ENST00000535669 1674 ntTSL 2 BASIC25.83■■□□□ 1.73
RTF1Q92541 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
RTF1Q92541 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
RTF1Q92541 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RTF1Q92541 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RTF1Q92541 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RTF1Q92541 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
RTF1Q92541 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.82■■□□□ 1.72
RTF1Q92541 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC25.82■■□□□ 1.72
RTF1Q92541 AL355355.2-201ENST00000442321 338 ntBASIC25.82■■□□□ 1.72
RTF1Q92541 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC25.82■■□□□ 1.72
RTF1Q92541 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.82■■□□□ 1.72
RTF1Q92541 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms