Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 AC079598.2-202ENST00000546624 1451 ntBASIC19.33■□□□□ 0.68
LMX1AQ8TE12 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 TFP1-202ENST00000475455 1573 ntBASIC19.32■□□□□ 0.68
LMX1AQ8TE12 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1AQ8TE12 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 SMG8-203ENST00000578922 2178 ntBASIC19.31■□□□□ 0.68
LMX1AQ8TE12 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.31■□□□□ 0.68
LMX1AQ8TE12 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 RCN1P1-201ENST00000400413 996 ntBASIC19.3■□□□□ 0.68
LMX1AQ8TE12 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 C1QL1P1-201ENST00000568105 661 ntBASIC19.3■□□□□ 0.68
LMX1AQ8TE12 MIR6786-201ENST00000616843 113 ntBASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 KRT8P9-201ENST00000558927 1449 ntBASIC19.3■□□□□ 0.68
LMX1AQ8TE12 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LMX1AQ8TE12 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 YBX1P10-201ENST00000444752 975 ntBASIC19.29■□□□□ 0.68
LMX1AQ8TE12 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 AC116562.2-201ENST00000507042 360 ntBASIC19.29■□□□□ 0.68
LMX1AQ8TE12 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 PHGDH-210ENST00000641115 1638 ntBASIC19.29■□□□□ 0.68
LMX1AQ8TE12 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LMX1AQ8TE12 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 AL390955.1-201ENST00000428694 934 ntBASIC19.28■□□□□ 0.68
LMX1AQ8TE12 TUBB8P6-201ENST00000436895 1288 ntBASIC19.28■□□□□ 0.68
LMX1AQ8TE12 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.28■□□□□ 0.68
LMX1AQ8TE12 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms