Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TMEM256-PLSCR3-203ENST00000571125 951 ntAPPRIS ALT2 TSL 524.22■■□□□ 1.474e-10■■□□□ 13
DDX55Q8NHQ9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.457e-12■■□□□ 13
DDX55Q8NHQ9 TMEM256-202ENST00000575427 403 ntTSL 215.6■□□□□ 0.094e-10■■□□□ 13
DDX55Q8NHQ9 TROAP-206ENST00000547923 1652 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.472e-6■■□□□ 13
DDX55Q8NHQ9 AL662884.1-201ENST00000559458 662 ntTSL 2 BASIC10.17□□□□□ -0.787e-12■■□□□ 13
DDX55Q8NHQ9 AC245033.1-201ENST00000562833 880 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.446e-7■■□□□ 12.9
DDX55Q8NHQ9 CPEB1-217ENST00000618698 2885 ntTSL 210.77□□□□□ -0.696e-7■■□□□ 12.9
DDX55Q8NHQ9 CPEB1-207ENST00000611031 3074 ntAPPRIS ALT1 TSL 5 BASIC10.43□□□□□ -0.746e-7■■□□□ 12.9
DDX55Q8NHQ9 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC9.24□□□□□ -0.936e-7■■□□□ 12.9
DDX55Q8NHQ9 FAAP20-207ENST00000420515 1544 ntTSL 1 (best)32.37■■■□□ 2.771e-7■■□□□ 12.9
DDX55Q8NHQ9 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.032e-12■■□□□ 12.9
DDX55Q8NHQ9 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.12e-12■■□□□ 12.9
DDX55Q8NHQ9 ZNF428-203ENST00000598676 827 ntTSL 523.24■■□□□ 1.313e-7■■□□□ 12.9
DDX55Q8NHQ9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.614e-6■■□□□ 12.9
DDX55Q8NHQ9 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.858e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20.36■□□□□ 0.858e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.858e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.858e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.13■□□□□ 0.818e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.818e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.778e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.778e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.778e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.658e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.648e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-210ENST00000525377 997 ntAPPRIS ALT2 TSL 519.08■□□□□ 0.648e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.08■□□□□ 0.648e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.648e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.648e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.638e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.528e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.528e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.58e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.118e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-204ENST00000396887 789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 08e-9■■□□□ 12.9
DDX55Q8NHQ9 IL32-229ENST00000549213 654 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.318e-9■■□□□ 12.9
DDX55Q8NHQ9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.932e-17■■□□□ 12.9
DDX55Q8NHQ9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.93■■□□□ 1.422e-17■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-216ENST00000601340 2197 ntTSL 218.85■□□□□ 0.613e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-208ENST00000598550 771 ntTSL 518.76■□□□□ 0.593e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.533e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-205ENST00000596477 865 ntTSL 317.68■□□□□ 0.423e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-214ENST00000601015 697 ntTSL 516.16■□□□□ 0.183e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-204ENST00000596358 1005 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.043e-6■■□□□ 12.9
DDX55Q8NHQ9 NOSIP-209ENST00000598820 2615 ntTSL 215.09■□□□□ 0.013e-6■■□□□ 12.9
DDX55Q8NHQ9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.823e-7■■□□□ 12.9
DDX55Q8NHQ9 TOP2A-202ENST00000577541 420 ntTSL 23.44□□□□□ -1.863e-7■■□□□ 12.9
DDX55Q8NHQ9 PABPN1-205ENST00000555295 406 ntTSL 315.91■□□□□ 0.142e-8■■□□□ 12.9
DDX55Q8NHQ9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.779e-10■■□□□ 12.9
DDX55Q8NHQ9 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.239e-10■■□□□ 12.9
DDX55Q8NHQ9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.013e-9■■□□□ 12.9
DDX55Q8NHQ9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.891e-10■■□□□ 12.9
DDX55Q8NHQ9 ATP5I-203ENST00000506525 496 ntTSL 1 (best)16.96■□□□□ 0.314e-6■■□□□ 12.9
DDX55Q8NHQ9 ATP5I-202ENST00000505852 300 ntTSL 212.36□□□□□ -0.435e-23■■□□□ 12.9
DDX55Q8NHQ9 ATP5I-201ENST00000304312 365 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.545e-23■■□□□ 12.9
DDX55Q8NHQ9 ATP5I-205ENST00000515202 393 ntTSL 29.61□□□□□ -0.871e-22■■□□□ 12.9
DDX55Q8NHQ9 ATP5I-204ENST00000515116 247 ntTSL 26.19□□□□□ -1.424e-6■■□□□ 12.9
DDX55Q8NHQ9 NASP-202ENST00000351223 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.431e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-221ENST00000531612 938 ntAPPRIS ALT2 TSL 59.58□□□□□ -0.881e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC9.33□□□□□ -0.921e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.011e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-203ENST00000372052 1458 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.031e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-218ENST00000530073 2740 ntTSL 28.52□□□□□ -1.051e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-223ENST00000534450 632 ntTSL 28.39□□□□□ -1.071e-8■■□□□ 12.9
DDX55Q8NHQ9 NASP-210ENST00000481782 3659 ntTSL 28.02□□□□□ -1.131e-8■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-220ENST00000489483 5682 ntTSL 215.77■□□□□ 0.121e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC14.77□□□□□ -0.041e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.53□□□□□ -0.081e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-201ENST00000307364 2586 ntTSL 1 (best)13.75□□□□□ -0.211e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.231e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC13.26□□□□□ -0.291e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC13.22□□□□□ -0.291e-21■■□□□ 12.9
DDX55Q8NHQ9 SLC26A6-217ENST00000480524 2727 ntTSL 1 (best)12.92□□□□□ -0.341e-21■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.03■□□□□ 0.484e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-217ENST00000555116 1885 ntTSL 217.18■□□□□ 0.344e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)16.93■□□□□ 0.34e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.93■□□□□ 0.34e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.49■□□□□ 0.234e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)14.88□□□□□ -0.034e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)14.16□□□□□ -0.144e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC13.86□□□□□ -0.194e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-207ENST00000553837 2152 ntTSL 512.91□□□□□ -0.344e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-212ENST00000554467 3416 ntTSL 212.84□□□□□ -0.354e-7■■□□□ 12.9
DDX55Q8NHQ9 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.394e-7■■□□□ 12.9
DDX55Q8NHQ9 YIPF2-208ENST00000589971 879 ntTSL 225.22■■□□□ 1.634e-13■■□□□ 12.9
DDX55Q8NHQ9 YIPF2-212ENST00000592646 950 ntTSL 322.29■■□□□ 1.164e-13■■□□□ 12.9
DDX55Q8NHQ9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.814e-13■■□□□ 12.9
DDX55Q8NHQ9 YIPF2-210ENST00000591872 430 ntTSL 215.8■□□□□ 0.124e-13■■□□□ 12.9
DDX55Q8NHQ9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.964e-7■■□□□ 12.9
DDX55Q8NHQ9 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.36■□□□□ 0.697e-7■■□□□ 12.9
DDX55Q8NHQ9 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.697e-7■■□□□ 12.9
DDX55Q8NHQ9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.217e-7■■□□□ 12.9
DDX55Q8NHQ9 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.295e-7■■□□□ 12.9
DDX55Q8NHQ9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.338e-9■■□□□ 12.9
DDX55Q8NHQ9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.47■■□□□ 1.198e-9■■□□□ 12.9
DDX55Q8NHQ9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.79■■■□□ 2.524e-11■■□□□ 12.9
DDX55Q8NHQ9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.354e-11■■□□□ 12.9
DDX55Q8NHQ9 ISYNA1-214ENST00000583816 860 ntTSL 317.93■□□□□ 0.464e-11■■□□□ 12.9
DDX55Q8NHQ9 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC17.08■□□□□ 0.324e-11■■□□□ 12.9
Retrieved 100 of 15,504 protein–RNA pairs in 92.4 ms