Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.5■□□□□ 0.39
SKA3Q8IX90 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.5■□□□□ 0.39
SKA3Q8IX90 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.5■□□□□ 0.39
SKA3Q8IX90 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 PCDHAC2-203ENST00000615316 3011 ntBASIC17.5■□□□□ 0.39
SKA3Q8IX90 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SKA3Q8IX90 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 KRT16P6-202ENST00000425692 1426 ntBASIC17.49■□□□□ 0.39
SKA3Q8IX90 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 AC006557.6-201ENST00000623071 864 ntBASIC17.49■□□□□ 0.39
SKA3Q8IX90 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.49■□□□□ 0.39
SKA3Q8IX90 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SKA3Q8IX90 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.48■□□□□ 0.39
SKA3Q8IX90 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.48■□□□□ 0.39
SKA3Q8IX90 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 TCF3P1-201ENST00000423021 1937 ntBASIC17.48■□□□□ 0.39
SKA3Q8IX90 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.48■□□□□ 0.39
SKA3Q8IX90 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
SKA3Q8IX90 AL691432.2-201ENST00000607222 2038 ntBASIC17.48■□□□□ 0.39
SKA3Q8IX90 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.48■□□□□ 0.39
SKA3Q8IX90 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SKA3Q8IX90 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.47■□□□□ 0.39
SKA3Q8IX90 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 KRT18P6-201ENST00000555540 1265 ntBASIC17.47■□□□□ 0.39
SKA3Q8IX90 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.47■□□□□ 0.39
SKA3Q8IX90 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SKA3Q8IX90 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SKA3Q8IX90 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SKA3Q8IX90 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms