Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 AC138907.5-202ENST00000569484 235 ntBASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 REXO1L12P-201ENST00000622156 912 ntBASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 KRT87P-202ENST00000534226 1464 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC245052.3-201ENST00000450182 901 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC128676.1-201ENST00000454392 318 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC079140.4-201ENST00000507448 529 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 MIR2861-201ENST00000636310 90 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 AC112907.3-201ENST00000577781 2400 ntBASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.36■□□□□ 0.21
PDLIM3Q53GG5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PDLIM3Q53GG5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PDLIM3Q53GG5 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms